Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01936 ATGGCATCATCGAAGGTTGAAATTGCTTGCTTTGATTCAACACAAAAATCAACATGGGTTTCAAGAGTTGCTAAGAATAAGAACTTTGGAAACCTGAATTTGAATAAAAGATTTCATAATGTATTTGGTGAAAAAGATGATTCTTCTTTGTCTGCATTGGTGAGTCCGCGGCATTCGAAGATAGTCGATCGATGGGCTGCGAGACAAGCTCAAGAAGTGGTGAGGAATCTTGAAAAGAATAATGAGGATGCTGCTGATAAGGTGTTTGATCATTTTCCTTCACGGTCGTCGAGTTTTAATTCTAGGAGAGGTAGAGAGGTTTCAGTTTCGCCTCCTCTTTCGGATGGATCAGGATCGTTCGAAAGTGAAAAAACATTCAACCTTGGTGCTTCTTCTCTTGTTCAGATATGGGAGAAAAGACTCGGTCAATCCAATTGCACGAAACAAAATGTGGCATCGATTGGAAGAACTAGTTCTGATTCGAGTAGTAATGAGATAAGTATGTTTTCTGTGGAAGATCATGGCAGGGTCTCGGAAGAAGAGGAATCCTCTGATGAGCCGTTTCAAAGTTGTTCTTCGAAAGTGCATTGTAATTCAGAGGCTAGTGAAAGTGATAAAAATAAGGTCGCTAATATTATAAAGAAACTATCGATTACAAATAAAATGCAAAGTGATGAGAATGATCACGAGCTAAGTAACAACGCGACATGTTCTCCATGTGTTTCCACGCCAAAACAATTACCTGAACGTAGATGTTTCGGTAAAGTCACATCCTACCCGCGTATTAGGGGGCGCCAAGCATTCCATGATTTAATTATGCAGTTTGAGAGTGATCGACATGGAGAGCTCAACAATCTTGCAGAGCAAGGCGCTGTTTCTAAGTTCACACAAAGAGGCCGTATTCAGTCATTGCTTCGACTTAGATTATTACAGCGCGGAGTAGCAGCTTTTGATCCATCCCGCTTGAAGTCAACTACACCTGAAGGGAACAAACAACAACAAGGATCAGTAATTATGCAACTAAGGGAAAGATTTAACAGAAGAGATGAACAAAGAACTTCATCCTTGATGGAATTGTCAAAACCAAGGTTGATATCAAAGAATTCAGTGTCTCAAACTAGTGCATATACCAAAGAAGAAGCTCATTTATGTTCTGGTTTTGAAGCTCAAAATAATACTCCAAAAGAAACTGTTGAGGCATTGTCGTTGAAGACTGACTCAAACACAAATATCGAAACACCTGATAATGTAGAGACAAGAGACCAACAATCTTATGATACTATTGAAACCAATTGCAGCGAGATAATGGAAGAGAATGATTGTAGTGACTATAATTATGATGAAACTAGAGAAAGTTATGACTGGGCCAGTCTCATTTCTCGGCCTAGAAGCTATTGGGAGGAACTTAGACAAGAATGGTACAAAGAAATGCTTAACTTTGGTTCGCACAATGACGAGAGACGCAAGCTCCTCGAAAGAAGAACAGTTTCAACTGTCCTTTCTAGTGACTTCCGAGAAAAGATGGATAAATTGATGACATCTCATAGGGGAGCACAAACACATCTAGTCAATAATCATAGCGATGAGGAAGACCTAGAAGGAAGTGTGCAACATTTGACGACATTTTTTCATGACCATTTCCACGTTAGAGGTAACGTTGAAGAAAATGGAAGAGATATAACGGAGAAAGAGGTGGCAGTGGAAGAGGAAAGCATCAACAGTGGTTCAGATCATGAACTTGGTGATTGTCAATCCTCATCATCGGTACATTCACCATCCTCGACAACATGGAGTTATGGAGACACTGATGGTGGAGATGATTCTGATAGAGTTATATTTGAAACTTCGCCATTGCCTTCACTATCTCAATCTTTCTATCAAGATAACAGACAATACTCTCCATCGACAAACCATCAACCAATTGATATGGAATTCATATACGATATGCGAGGGCAAATGGAACAACTTTTACGCGAGATGTCTGAGTTAAGGAAAACACTAAAACATTGCACAGACATGAATATGCAATTACAACAATCCCAGAAACAAGAAGTTCATAAAGTAAGAGAAAAGAACTTCACTAACAAAACATCAAAGAAAGGCAAATGCTGCATTTGCAATGAGAATAAAGCAAACGCAGTTTTATACAGATGTGGGCACATGTGTGCATGTTTCAAATGTGCTAGTGAGTTGCAATGGAAAAGTGGAAAATGTCCAATATGCCAAGTTGAAATAATAGATGTTGTTCAAGTATATACTAACACATAA 2268 0.3898 MASSKVEIACFDSTQKSTWVSRVAKNKNFGNLNLNKRFHNVFGEKDDSSLSALVSPRHSKIVDRWAARQAQEVVRNLEKNNEDAADKVFDHFPSRSSSFNSRRGREVSVSPPLSDGSGSFESEKTFNLGASSLVQIWEKRLGQSNCTKQNVASIGRTSSDSSSNEISMFSVEDHGRVSEEEESSDEPFQSCSSKVHCNSEASESDKNKVANIIKKLSITNKMQSDENDHELSNNATCSPCVSTPKQLPERRCFGKVTSYPRIRGRQAFHDLIMQFESDRHGELNNLAEQGAVSKFTQRGRIQSLLRLRLLQRGVAAFDPSRLKSTTPEGNKQQQGSVIMQLRERFNRRDEQRTSSLMELSKPRLISKNSVSQTSAYTKEEAHLCSGFEAQNNTPKETVEALSLKTDSNTNIETPDNVETRDQQSYDTIETNCSEIMEENDCSDYNYDETRESYDWASLISRPRSYWEELRQEWYKEMLNFGSHNDERRKLLERRTVSTVLSSDFREKMDKLMTSHRGAQTHLVNNHSDEEDLEGSVQHLTTFFHDHFHVRGNVEENGRDITEKEVAVEEESINSGSDHELGDCQSSSSVHSPSSTTWSYGDTDGGDDSDRVIFETSPLPSLSQSFYQDNRQYSPSTNHQPIDMEFIYDMRGQMEQLLREMSELRKTLKHCTDMNMQLQQSQKQEVHKVREKNFTNKTSKKGKCCICNENKANAVLYRCGHMCACFKCASELQWKSGKCPICQVEIIDVVQVYTNT 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01936 755 PANTHER BNAC05G24000D PROTEIN 404 754 - -
Vifa6g01936 755 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 677 753 IPR013083 -
Vifa6g01936 755 MobiDBLite consensus disorder prediction 564 608 - -
Vifa6g01936 755 MobiDBLite consensus disorder prediction 577 602 - -
Vifa6g01936 755 Coils Coil 67 87 - -
Vifa6g01936 755 MobiDBLite consensus disorder prediction 148 199 - -
Vifa6g01936 755 MobiDBLite consensus disorder prediction 95 121 - -
Vifa6g01936 755 SMART ring_2 703 741 IPR001841 -
Vifa6g01936 755 MobiDBLite consensus disorder prediction 148 169 - -
Vifa6g01936 755 Pfam Zinc finger, C3HC4 type (RING finger) 700 747 - -
Vifa6g01936 755 SUPERFAMILY RING/U-box 702 748 - -
Vifa6g01936 755 CDD mRING-HC-C3HC5_NEU1 700 752 - -
Vifa6g01936 755 Coils Coil 646 673 - -
Vifa6g01936 755 ProSiteProfiles Zinc finger RING-type profile. 703 742 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01936 Vifa-Chr6 720868155 720871464 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01936 702 755 C3H Transcription Factor Family AT3G06140 35.185 2.75e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01936 - - psat:127103743 1304.27