Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01926 ATGGTTGCCCAACACCCGCAACTTCAGATTCAGACTCAACAACCTACACCTTCTCCTCAAGACGAAGCCTTGAAGAGAAACACCGATTGTGTCTACTTTCTTGCTTCTCCCTTGACATGCAAAAAGGGAAATGAATGCGAGTACCGCCATAGTGAGTATGCCCGAGTAAATCCTAGAGATTGCTATTATTGGTTGAATGGTAACTGCTTGAATCCCAAGTGTTCATTCCGTCATCCGCCTCTTGACGGGTTGTTAGGAACCCCACCTGCAACTGCTGCTGCAGGACCATCCGTATCCGTGTCACAGATTGCAACAACATCTGCGGCGCACGCACCTTATAATTCTAGTAAACAAGCTGTCCCATGCATTTTCTTCCAAAAGGGGTTTTGCTTAAAAGGAGACAGATGTGCCTTCATGCATGGACCAAATCCTAACAATGGCAGTAAAATAGCTACACAGGGCTCGATCACCAACCAAGGAGCTGAGAATCCAAATTTTAAGAAACCTTTTGGTGGCACTGAAAAACATACACAGGAAAGGAAAACTTCCCAAGCAAATGTTGGAGGTGCAGCTGAAGCTAAACCTGTCAATGTCAAAAAATTTGAAACTGCTCCACAGAAAAATATATTTAAATTGGAGAAGCATGTGCCGGCAACTCTACCTTCAGGATTTGACAATGAGGCTTCAAGATTTAAGGCACCTAGTTCTCCACCGCTGACCAACGGGCCTAATGTAGCCCGGTCTAATCGTGTGCATCAACCTCGTCTGCCGGATGATCACAGTTTCCATAGTGGTAAGGACAGTGACGAGTTTCTCAGAGAATCATCTCCTGGGTTTGATGTTCTTGTAGCTGACGAACTTAGGAATTCTGATTACTATCACGGGGAAGATGAATTTGGTATAACAAGAGCTCAAGATGAAAGTGGCCTAGACCCTTTGAATGAATATGATGTGGGGCATTCTGCTGATTATAGTTTAGCTGCTGATATTGATCGAGATAGATTTCGTGTGCCCCAAGCATATGACTCGTATGATCACATGCAAGAGCCATATGGTTGGGAACCTAGGAAGGCATCAACCCATACAGAAAGGACTCGTAACAGTTCTCGCAGTCCTGACAGTGTTGAGGTCTCAGATCTCCGACATCGTTTATCCAAGCGCAGGAAGGGTCTGAAATCTGTTGTCACTCATGACGAAGAGCAAAGTCGTCGATTCTCTCGGAAAGATTCGCTCCACTTATCTTCGAATGAGAGATCCGTCAATAATCGTTTCCGAGGAAGAATAACACTTCCACCGAATGGTGGCGAGGGTCACTTAGAGAGGGACTTAGAGAGAGGAAGGGACTTGGACAGAGGAAGGGACCTGGACAGAGGAAGAATCAGTAGCAGGTTATCATCTGGAAGGCTGCACCCTCCTCACGAGGGAAGGATCCACGATAGAATGAGAGACAGGTTGCCAGATGATGAGAGGAGAAACTTCAGAGGTCGATCTTTGGGAGACCGAAGTGGGTTCTCTGCACCTAAAAGTCTTGCTGAGCTTAAATATGGGAGAAACCCTGAAAGTACAGAGCAACAATCATTGGGAAAGAGGAAAAGCTACCAACAATATGAAGATGATGTTCCATTTGAAGGTCCAAAGCCTCTCAGTGAAATTCTGAAGGAGAAGAAAGGAGTTGGAGCTGCTGTAGCCTCTTCTCAGAGCAGCAAATCAGCCTATAATAATAAGAATGAAGGAATAACTGAAAACGGAGCGTTGTTAGAGACCAAGGAAGAGGAATCCAAGAATCGGGCTGCTGATGTTGTTGGAAGAGAGGTTGAAAACACTAATGTAACTCATCAGTTGCCCGAGGATGGAATAATATACGATGAAGCTGTCGAAGAACAAGAGTACGAAGGCGATGATCAAGGAGAGGAAGGGGGAGACTATGAATATGAGCAAGGTGACGAGGAGTATGATTATGAACAAGTTGATGAGGGGGAAAATCAAGAGCAAGAATATATGGAAGAAGATGAAGATGGTGATGATTTTGCCAAGAAGATTGGTGTTGTTCTTTCATAA 2058 0.4485 MVAQHPQLQIQTQQPTPSPQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCYYWLNGNCLNPKCSFRHPPLDGLLGTPPATAAAGPSVSVSQIATTSAAHAPYNSSKQAVPCIFFQKGFCLKGDRCAFMHGPNPNNGSKIATQGSITNQGAENPNFKKPFGGTEKHTQERKTSQANVGGAAEAKPVNVKKFETAPQKNIFKLEKHVPATLPSGFDNEASRFKAPSSPPLTNGPNVARSNRVHQPRLPDDHSFHSGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGITRAQDESGLDPLNEYDVGHSADYSLAADIDRDRFRVPQAYDSYDHMQEPYGWEPRKASTHTERTRNSSRSPDSVEVSDLRHRLSKRRKGLKSVVTHDEEQSRRFSRKDSLHLSSNERSVNNRFRGRITLPPNGGEGHLERDLERGRDLDRGRDLDRGRISSRLSSGRLHPPHEGRIHDRMRDRLPDDERRNFRGRSLGDRSGFSAPKSLAELKYGRNPESTEQQSLGKRKSYQQYEDDVPFEGPKPLSEILKEKKGVGAAVASSQSSKSAYNNKNEGITENGALLETKEEESKNRAADVVGREVENTNVTHQLPEDGIIYDEAVEEQEYEGDDQGEEGGDYEYEQGDEEYDYEQVDEGENQEQEYMEEDEDGDDFAKKIGVVLS 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01926 685 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 21 683 - -
Vifa6g01926 685 FunFam Zinc finger CCCH domain-containing protein 17 18 81 - -
Vifa6g01926 685 MobiDBLite consensus disorder prediction 1 22 - -
Vifa6g01926 685 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 120 142 IPR000571 GO:0046872
Vifa6g01926 685 SUPERFAMILY CCCH zinc finger 117 141 IPR036855 GO:0046872
Vifa6g01926 685 MobiDBLite consensus disorder prediction 391 414 - -
Vifa6g01926 685 MobiDBLite consensus disorder prediction 625 672 - -
Vifa6g01926 685 MobiDBLite consensus disorder prediction 157 193 - -
Vifa6g01926 685 ProSiteProfiles Zinc finger C3H1-type profile. 116 143 IPR000571 GO:0046872
Vifa6g01926 685 MobiDBLite consensus disorder prediction 581 611 - -
Vifa6g01926 685 MobiDBLite consensus disorder prediction 584 601 - -
Vifa6g01926 685 ProSiteProfiles Zinc finger C3H1-type profile. 55 81 IPR000571 GO:0046872
Vifa6g01926 685 MobiDBLite consensus disorder prediction 349 383 - -
Vifa6g01926 685 MobiDBLite consensus disorder prediction 341 535 - -
Vifa6g01926 685 MobiDBLite consensus disorder prediction 252 273 - -
Vifa6g01926 685 MobiDBLite consensus disorder prediction 625 685 - -
Vifa6g01926 685 Pfam Zinc-finger containing family 25 79 IPR041686 -
Vifa6g01926 685 Gene3D - 107 181 - -
Vifa6g01926 685 Gene3D - 16 81 - -
Vifa6g01926 685 SMART c3hfinal6 116 142 IPR000571 GO:0046872
Vifa6g01926 685 SMART c3hfinal6 25 52 IPR000571 GO:0046872
Vifa6g01926 685 SMART c3hfinal6 57 80 IPR000571 GO:0046872
Vifa6g01926 685 ProSiteProfiles Zinc finger C3H1-type profile. 24 53 IPR000571 GO:0046872
Vifa6g01926 685 MobiDBLite consensus disorder prediction 233 248 - -
Vifa6g01926 685 MobiDBLite consensus disorder prediction 437 497 - -
Vifa6g01926 685 MobiDBLite consensus disorder prediction 221 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01926 Vifa-Chr6 717221681 717224634 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa6g01926 zf-CCCH_3 5.3e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01926 - - gmx:100787836 756.903