Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01902 ATGGCTGAGATGGAAACCTTAGGAAAAATCAAGCATAGAAATCTTGTCCCTTTATTAGGATACTGCAAAGTAGGTGAAGAGAGGCTACTTGTTTATGAATACATGGAATTTGGAAGCTTAGAAGAGATGCTCCACGGAAGAATAAAGACACGCGATCGACGCATTTTAACATGGGAAGAAAGGAAGAAAATTGCAAGAGGTGCTGCTAAAGGACTTTGTTTTCTGCATCACAATTGCATCCCTCACATCATACACAGAGACATGAAATCAAGCAATGTGTTACTTGATCATGAAATGGAGTCAAGGGTCTCGGATTTCGGGATGGCAAGACTAATAAGCGCGCTCGATACACATCTTAGTGTAAGCACACTAGCAGGAACACCAGGATATGTTCCACCAGAATACTACCAAAGTTTCAGGTGCACTGCAAAGGGTGATGTATACTCATTTGGTGTTGTAATGTTGGAGCTTCTTAGCGGGAAGCGTCCTACCGATAAAGAGGATTTCGGCGACACAAACTTGGTCGGATGGGCTAAGATTAAGGTGCGCGAAGGGAAACAAATGGAAGTGATTGATTCTGATTTGCTTTTGGAGACTCAAGGAGGAACAAATGAAGCAGAAGTGAACGAAGTGAAAGAAATGTTGAGATATTTGGAGGTTACTTTGCGGTGTGTCGATGATTTTCCTTCGAGAAGGCCAAGCATGTTGCAGGTAGTTGCCATGTTGAGAGAGCTTATGCCTGGATCAAATGAAGGAAGCAGCAACAGTGCTTAA 774 0.4276 MAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMEFGSLEEMLHGRIKTRDRRILTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMESRVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELLSGKRPTDKEDFGDTNLVGWAKIKVREGKQMEVIDSDLLLETQGGTNEAEVNEVKEMLRYLEVTLRCVDDFPSRRPSMLQVVAMLRELMPGSNEGSSNSA 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01902 257 FunFam serine/threonine-protein kinase BRI1-like 2 35 253 - -
Vifa6g01902 257 ProSitePatterns Serine/Threonine protein kinases active-site signature. 83 95 IPR008271 GO:0004672|GO:0006468
Vifa6g01902 257 Pfam Protein kinase domain 2 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01902 257 ProSiteProfiles Protein kinase domain profile. 1 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01902 257 Gene3D Phosphorylase Kinase; domain 1 1 35 - -
Vifa6g01902 257 SMART serkin_6 1 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01902 257 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 244 - -
Vifa6g01902 257 SUPERFAMILY Protein kinase-like (PK-like) 2 242 IPR011009 -
Vifa6g01902 257 Gene3D Transferase(Phosphotransferase) domain 1 36 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01902 Vifa-Chr6 710584727 710585500 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01902 1 254 Receptor kinase-like Gene Family AT1G55610 64.706 3.48e-112 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vifa6g01902 Pkinase 7.9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01902 - - mtr:120577570 499.204