LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g01876	ATGGGCCGTGTTCGTACAAAGACAGTCAAGAAATCTTCCCGTCAGGTAATTGAAAGGTACTACTCTCGTATGACACTCGACTTCCATACGAACAAGAAGATTCTTGAGGAGGTTGCTCTGATCCCAACCAAGAGGCTTCGTAACAAGATTGCAGGATTCTCCACTCACCTCATGAAGCGAATCCAGAAAGGACCGGTTCGTGGAATCTCATTGAAGCTGCAGGAGGAGGAGCGCGAGCGTCGTATGGACTTTGTTCCTGATGTGTCTGCCATTGGGACGGATCATATCGAAGTTGATAAGGAAACTCTTGAGATGCTTGCCGCTCTTGGGATGTCCGAGATTCCTGGTGTCGTTCAGGTTGATCCGCAACCGGTTCAACCGATCCCCTTTGGTCGCGGCGGTGCTGCTGGTGCTCCTGGAAGAAGGTTTTAA	432	0.5023	MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPTKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIGTDHIEVDKETLEMLAALGMSEIPGVVQVDPQPVQPIPFGRGGAAGAPGRRF	143

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g01876	143	Hamap	30S ribosomal protein S17e [rps17e].	1	63	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Vifa6g01876	143	ProSitePatterns	Ribosomal protein S17e signature.	41	56	IPR018273	GO:0003735\|GO:0005840\|GO:0006412
	Vifa6g01876	143	FunFam	40S ribosomal protein S17	1	62	-	-
	Vifa6g01876	143	SUPERFAMILY	Rps17e-like	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Vifa6g01876	143	PANTHER	40S RIBOSOMAL PROTEIN S17	1	124	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Vifa6g01876	143	Gene3D	-	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Vifa6g01876	143	Pfam	Ribosomal S17	1	120	IPR001210	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa6g01876	Vifa-Chr6	702966610	702967041	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa6g01876	1	136	Cytoplasmic Ribosomal Protein Gene Family	AT2G04390	83.942	3.46e-78	226

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa6g01876	K02962		-	gmx:100819067	227.254