Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01869 ATGGCATCAATGGAAGACATGAACATGAGTACTGAAGAAATTACACTTCCTGGATTCAGATTTCATCCCACAGAAGAAGAACTCCTTGATTTCTATCTTAAAAATATGGTTATTGGCAAGAAACTTCGTTACGATGTCATTGGTTTTCTCAACATCTATCACCATGATCCTTGGGACTTGCCAGGTTTGTCAAAGGTTGGGGAAAGAGAATGGTATTTCTTTGTTCCAAGGGACACAAAACATGGTAGTGGAGGAAGGCCTAACCGCACAACTGAAAAAGGCTTCTGGAAAGCAACCGGTTCGGACCGGAAAATCGTGACGTTGTCGGATCCGAAGCGGATCATCGGGTTGAGGAAGACGTTGGTTTTCTATGAGGGAAGAGCTCCACGAGGAAGCAAGACCGATTGGGTCATGAATGAGTATCGTTTACCTGACAATAGCCCCTTGCCTAAGGACATAGTGTTGTGCAAGATATATAGAAAGGCAACTTCGTTGAAAGTGCTTGAACAAAGAGCAGCGGAAGAAGAAGAGATGAAACAAATTGTGGTTGGTTCTCCTACATCCCCACCTTCCTCTACGGACACAATCTCCTTTAACTACACACAACAAGACCAGCACGTGTCCGTACCGTTTTTGTTCCAACAAGTTATTCCTAAAAAAGAATCTCAACATGAAACTGAACCTGTAACAAAAACCGAAACTCATAACATGGATTCTTTGCCTCTGACAGAGAAACCATGTTATGAAAAAACAATGACTCAGATGAAAGATAATAACAAAAAGACTTGTGGAACATCCTTGCAATTGCCCTTAGGGAAGGACAATGTTCCTGAGTTACAGTTACCTATTGTAACGGATTGGACTCAAGATACCTTTTGGACTCAGCTTAACAGTCCTTGGCTACAAAACTGGACTGCTTACTCCAACATCCTCAATTTCTAG 942 0.4204 MASMEDMNMSTEEITLPGFRFHPTEEELLDFYLKNMVIGKKLRYDVIGFLNIYHHDPWDLPGLSKVGEREWYFFVPRDTKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYEGRAPRGSKTDWVMNEYRLPDNSPLPKDIVLCKIYRKATSLKVLEQRAAEEEEMKQIVVGSPTSPPSSTDTISFNYTQQDQHVSVPFLFQQVIPKKESQHETEPVTKTETHNMDSLPLTEKPCYEKTMTQMKDNNKKTCGTSLQLPLGKDNVPELQLPIVTDWTQDTFWTQLNSPWLQNWTAYSNILNF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01869 313 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 230 - -
Vifa6g01869 313 MobiDBLite consensus disorder prediction 220 241 - -
Vifa6g01869 313 ProSiteProfiles NAC domain profile. 15 161 IPR003441 GO:0003677|GO:0006355
Vifa6g01869 313 FunFam NAC domain-containing protein 67-like 24 165 - -
Vifa6g01869 313 SUPERFAMILY NAC domain 14 161 IPR036093 GO:0003677|GO:0006355
Vifa6g01869 313 Gene3D NAC domain 24 165 IPR036093 GO:0003677|GO:0006355
Vifa6g01869 313 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01869 Vifa-Chr6 700491157 700492587 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01869 12 310 NAC Transcription Factor Family AT2G17040 58.804 1.06e-116 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa6g01869 NAM 5.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01869 - - gmx:732555 452.595