Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01866 ATGAAAGAAAGTGGTGGAGGTAGAAAACAAGGTGCAGCTTCACCCTGTGCTGCATGCAAACTTCTAAGAAGAAGATGTGCTCAAGATTGTGTCTTTGCTCCTTATTTCCCTGCCGACCAACCCCACAAGTTTGCTAATGTTCATAAAGTCTTTGGTGCTAGCAATGTCAACAAGATGCTTCAGGACTTGCCTGAACATCAAAGAGGGGATGCAGTGAGTAGCATGGTGTATGAAGCAAATGCAAGAGTGAGAGACCCTGTCTATGGTTGTGTAGGGGCAATTTCGTCACTTCAGCAACAAATTGATGTTCTACAAACCCAATTGGCTGTGGCCCAAGCTGAGGCTGTGCACCTAAGGGTGCGCCAAACTGCATCATCCTTTTGGAACAGTGCAGGACATAGCCCAACTAGCCCAACCTATAGTGGCTCTCCATCATCCAAAATCAATGAATCACAAGCCAAACATTTGTTTGATATGGACATGGTGGTGGACCAAGGTGGTTATGGTGATTCAATGTGGTGA 522 0.4579 MKESGGGRKQGAASPCAACKLLRRRCAQDCVFAPYFPADQPHKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTASSFWNSAGHSPTSPTYSGSPSSKINESQAKHLFDMDMVVDQGGYGDSMW 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01866 173 Coils Coil 94 114 - -
Vifa6g01866 173 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Vifa6g01866 173 MobiDBLite consensus disorder prediction 128 148 - -
Vifa6g01866 173 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Vifa6g01866 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01866 Vifa-Chr6 697743430 697745609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01866 1 173 AS2 family AT1G31320 69.318 3.11e-74 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa6g01866 LOB 4.8e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01866 - - jre:108980655 274.248