Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01864 ATGGAGTTCTATGTTGAAGCGGTGGGAACCATAGAGAACTGTTTCGCGTCCCTCCCTTTACCTCTAATCCAAACTCTCCAATCCACATCTTCATCTTCCCTCCCTCCTATCCTCGCTCTCGAGCTTCGTTCTTCTTCTCACCCCCCTCACTCCTGGTTCGTCGCTTGGTCCGGCGCCACTTCCTCTTCCTCTTCCCCTTCATCCATACAACTTTCTCAACAATTCGCCGAATGCCTCTCCCTACCGATTCACTCTCCACTTCAAGTTAAAGTCGCCTCTAACGTCCCGCACGCTTCTTCCGTCTCTATAGAACCAGACACGGAAGATGATTGGGAAATTCTCGAACTTAATTCCGAACAAGCAGAAGCTCAAATTCTCAATCAGATTAGGATTGTTCATGAAGGGATGAGGTTTCCTTTGCGTTTGAATGGTCACACTGTTATCACATTCCATGTCGCTTCTGTTTTTCCCAAGAATGCGGTGGTACAACTCATGCCAGGAACTGAAGTCGATGTTGCTCCGAAAACACGCAAAAGAAATTCAGATTCACTGGTAGATTCACATGTAGGTTCCAATAGTAAAGATCATACTGCAAAGATGCTGGTCCGTTTACAGGAACCGAATGATTTATGCCGTACCAGTACTCATGTCAAAGGGGTCAAGCTTCATGTTGGGCTTACTCCGGTCGCTTTTGTTCATCCAGAAACAGCCAAGCGGTTCTCATTTAATATGCTTCAGTTGGTTTCCATTGTGCCGAGAGAATCGAAAGAGAATGTTAATCATTCTAGAACTAAATCAAACAATATGAAAATCAAAGGTGGTTCAGCTATTAATCAAGATGAGAATGGAGATACTGACAAGAAGGAATGTCGACAAGCAATTGTTCATCTCTTGATTTCAGAATCTGTGGCTAAAGGACATGTAATGCTAGCTAAGTCTCTTCGCCTTTATTTGAGAGCTAGCTTGCATTCATGGGTTTATTTGAAGGCATGTGATGTTATTTTGGAAAAAAGCATTCCTTCCATTTCTCTTTCTCCTTGTCAATTCAAACTGTTAAGGCAGGAGAGCACTGTTGGGAAAGATGGTCTAGATGATTTTCACGGCCACAGGAATCACATTGATGAAAAATTGCATGGAAAAGCTACTTCGGGTGTCTTCTTGGATACCCTAAATTGGTCGATCCACAATGAAGTTGTTGCAGCTCTCTCTAATGAATCAAGTAACAAATCAGAGGAAGAGGTTGCAAACCAATCTCAGAATCAAAAGGGATTACAAAGTCTTGTACGACTATGGTATATTGCCCAGCTTGAGGCAATTACTTCCATTGCAGGGGTGGAAGTTAATTCATTGGTTATCTGTAGTAAAACCTTATTTCACTTTGAATTAAGCTGTTACAAGATTGGGAGTGATGAGAAGCTTCAGCTGACTTCTTCAGAAAACATTGGCAAGGCAGTTGAAATGTTATTTTTATTGACCTTTGGTGAAGAAGATGTGCATCATGGGAAACTTAATGCATATGAAGTTTCACTCGGTGGAAAACTCAATAACATCAAAATTGAGGATCTGAAGCATTTTGAAAGAGTGAAATTGGGTGATCCTGTTTCTCTTCGTTTTATGGAAGAGAGAGCCTCCGAAAACCACATTAGTTCAAATGTATCTTTCCTTGGCTGGATGGAGAAAACTGCTTCTGATGTTATCAATAGGATGCTGGTATTGTTATCTTCAGCATGTGGTTTGTGGTTTGGCTCATGCAACCTGCCACTTCCTGGACATGTTCTAATATATGGACCTCCGGGTTCTGGGAAAACTATACTAGCAATGAATGTGGCAAAATCCCTTGAGAATCGTGAAGACATCTTAGCACACATAATTATTGTTTCCTGCTCAAAACTTGCTTTGGAGAAGGTCTCAATTATTCGCCAAGAACTTGCAAACCATATAACTGAAGCTATAAACCATGCACCTTCTGTTGTCATCTTTGATGATCTTGATAGTATAATTTCTACCCCTGATTCTGAAGGATCTCAGCCATCAATGTCTGTTGCTGGTCTCACAGATTTTCTTGCTGACATTCTTGATGAATATGGGGAGAAGAGGCGTAAATCATGTGGATTTGGACCAATAGCTTTCATAGCAACCATACAGTCCCTAGAAAATATGCCACAATCTTTGAGCTCTTCAGGACGGTTTGACTTTCATATTAAGCTGCCTGCTCCTGCAGCTTCTGAGCGCAAGGCTATGTTGAAGAATATAATACAAAGGCGACACTTGCAATGTAATGATGACATCCTACTTGATGTGGCTGTAAAATGTGATGGTTATGATGGCTATGATCTGGAAACATTAGTTGACAGAACTGTACATGCTGCTGTTCGCCGTTTTCTGCCATCTAATGCCATTTATGAGCATGAGGGTCCTGCTTTACTACAGGAGGATTTCTCTCGGGCAATGCATGATTTTCTCCCAGTTTCAATGCGTGACATCACAAAGTCTATTTCTGATGATGGCCGTTCTGGATGGGACGATGTTGGTGGTCTTGTTGATATTCGAAATGCTATTAAAGAGATGATAGAATTGCCATCAAAGTTTCCAAAAACTTTTGCACAAGCACCATTAAGGTTGCGGTCAAATATCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACTTAGTCGGTGCTGCTGCGGCTGCTTCTTCACTTCGATTCATATCAGTGAAAGGGCCAGAACTGTTAAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGAGATATATTCTCCAAAGCAGCAGCTGCAGCACCATGCCTACTTTTTTTTGATGAATTTGATTCTATAGCTCCTAAGAGAGGGCACGACAATACTGGAGTAACTGATCGTGTTGTCAATCAATTTTTGACGGAGTTAGACGGTGTTGAGATTTTAGCTGGTGTTTTTGTGTTTGCTGCAACCAGTAGACCCGACTTACTGGATGCGGCACTGTTGAGACCGGGTAGATTAGATCGTCTTCTATTTTGTGACTTTCCATCATGGCATGAGAGATTGGAAATTCTTACTGTACTTTCTAAAAAGTTACCAATGGCCAGTGATATTGATTTAGCTGCAGTAGCTAATGTGACTGAAGGATTCAGTGGAGCTGATCTCCAAGCTCTCCTCTCAGATGCACAGCTTGCTGCAGTTCATGATATTCTTGACAATATCGATACATCTAGATCAGAGAAAACACCAGTTATTACCGATGATCTTCTAAAACTCACTGCATCCAATGCAAGACCATCTGTTTCTGAGGAAGAGAAAAGGCGACTCTACAGTATTTATCGCCAGTTCCTGGATTCCAAGAAATCTGTTGCTGCCCAGTCAAGGGATGCAAAAGGCAAGAGGGCAACTCTAGCGTGA 3396 0.4184 MEFYVEAVGTIENCFASLPLPLIQTLQSTSSSSLPPILALELRSSSHPPHSWFVAWSGATSSSSSPSSIQLSQQFAECLSLPIHSPLQVKVASNVPHASSVSIEPDTEDDWEILELNSEQAEAQILNQIRIVHEGMRFPLRLNGHTVITFHVASVFPKNAVVQLMPGTEVDVAPKTRKRNSDSLVDSHVGSNSKDHTAKMLVRLQEPNDLCRTSTHVKGVKLHVGLTPVAFVHPETAKRFSFNMLQLVSIVPRESKENVNHSRTKSNNMKIKGGSAINQDENGDTDKKECRQAIVHLLISESVAKGHVMLAKSLRLYLRASLHSWVYLKACDVILEKSIPSISLSPCQFKLLRQESTVGKDGLDDFHGHRNHIDEKLHGKATSGVFLDTLNWSIHNEVVAALSNESSNKSEEEVANQSQNQKGLQSLVRLWYIAQLEAITSIAGVEVNSLVICSKTLFHFELSCYKIGSDEKLQLTSSENIGKAVEMLFLLTFGEEDVHHGKLNAYEVSLGGKLNNIKIEDLKHFERVKLGDPVSLRFMEERASENHISSNVSFLGWMEKTASDVINRMLVLLSSACGLWFGSCNLPLPGHVLIYGPPGSGKTILAMNVAKSLENREDILAHIIIVSCSKLALEKVSIIRQELANHITEAINHAPSVVIFDDLDSIISTPDSEGSQPSMSVAGLTDFLADILDEYGEKRRKSCGFGPIAFIATIQSLENMPQSLSSSGRFDFHIKLPAPAASERKAMLKNIIQRRHLQCNDDILLDVAVKCDGYDGYDLETLVDRTVHAAVRRFLPSNAIYEHEGPALLQEDFSRAMHDFLPVSMRDITKSISDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNILLYGPPGCGKTHLVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILAGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSKKLPMASDIDLAAVANVTEGFSGADLQALLSDAQLAAVHDILDNIDTSRSEKTPVITDDLLKLTASNARPSVSEEEKRRLYSIYRQFLDSKKSVAAQSRDAKGKRATLA 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01864 1131 Gene3D - 839 1101 IPR027417 -
Vifa6g01864 1131 Pfam ATPase family associated with various cellular activities (AAA) 878 1005 IPR003959 GO:0005524|GO:0016887
Vifa6g01864 1131 Pfam ATPase family associated with various cellular activities (AAA) 592 737 IPR003959 GO:0005524|GO:0016887
Vifa6g01864 1131 SUPERFAMILY ADC-like 10 82 IPR009010 -
Vifa6g01864 1131 SMART AAA_5 874 1010 IPR003593 GO:0016887
Vifa6g01864 1131 SMART AAA_5 588 740 IPR003593 GO:0016887
Vifa6g01864 1131 MobiDBLite consensus disorder prediction 258 284 - -
Vifa6g01864 1131 ProSitePatterns AAA-protein family signature. 978 996 IPR003960 GO:0005524|GO:0016887
Vifa6g01864 1131 FunFam Nuclear valosin-containing protein-like 836 1014 - -
Vifa6g01864 1131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 580 818 IPR027417 -
Vifa6g01864 1131 Gene3D - 540 739 IPR027417 -
Vifa6g01864 1131 Gene3D - 740 833 - -
Vifa6g01864 1131 FunFam Peroxisome biogenesis factor 1 96 175 - -
Vifa6g01864 1131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 840 1101 IPR027417 -
Vifa6g01864 1131 MobiDBLite consensus disorder prediction 264 280 - -
Vifa6g01864 1131 FunFam Peroxisome biogenesis protein 1 545 739 - -
Vifa6g01864 1131 PANTHER AAA-FAMILY ATPASE 224 1108 - -
Vifa6g01864 1131 Pfam AAA+ lid domain 1030 1069 IPR041569 -
Vifa6g01864 1131 Gene3D - 96 176 - -
Vifa6g01864 1131 Gene3D - 1009 1088 - -
Vifa6g01864 1131 Pfam Peroxisome biogenesis factor 1, N-terminal 100 174 IPR015342 GO:0005524|GO:0005777|GO:0007031
Vifa6g01864 1131 CDD RecA-like_PEX1_r2 849 1006 - -
Vifa6g01864 1131 SUPERFAMILY Cdc48 domain 2-like 96 174 IPR029067 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01864 Vifa-Chr6 697674980 697696538 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01864 589 795 Calmodulin-binding Proteins AT3G56690 29.808 1.64e-11 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01864 K13338 - gmx:100803882 1777.68