Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01863 ATGGAGTTCTATGTTGAAGCGGTGGGAACCATAGAGAACTGTTTCGCGTCCCTCCCTTTACCTCTAATCCAAACTCTCCAATCCACATCTTCATCTTCCCTCCCTCCTATCCTCGCTCTCGAGCTTCGTTCTTCTTCTCACCCCCCTCACTCCTGGTTCGTCGCTTGGTCCGGCGCCACTTCCTCTTCCTCTTCCCCTTCATCCATACAACTTTCTCAACAATTCGCCGAATGCCTCTCCCTACCGATTCACTCTCCACTTCAAGTTAAAGTCGCCTCTAACGTCCCGCACGCTTCTTCCGTCTCTATAGAACCAGACACGGAAGATGATTGGGAAATTCTCGAACTTAATTCCGAACAAGCAGAAGCTCAAATTCTCAATCAGATTAGGATTGTTCATGAAGGGATGAGGTTTCCTTTGCGTTTGAATGGTCACACTGTTATCACATTCCATGTCGCTTCTGTTTTTCCCAAGAATGCGGTGGTACAACTCATGCCAGGAACTGAAGTCGATGTTGCTCCGAAAACACGCAAAAGAAATTCAGATTCACTGGTAGATTCACATGTAGGTTCCAATAGTAAAGATCATACTGCAAAGATGCTGGTCCGTTTACAGGAACCGAATGATTTATGCCGTACCAGTACTCATGTCAAAGGGGTCAAGCTTCATGTTGGGCTTACTCCGGTCGCTTTTGTTCATCCAGAAACAGCCAAGCGGTTCTCATTTAATATGCTTCAGTTGGTTTCCATTGTGCCGAGAGAATCGAAAGAGAATGTTAATCATTCTAGAACTAAATCAAACAATATGAAAATCAAAGGTGGTTCAGCTATTAATCAAGATGAGAATGGAGATACTGACAAGAAGGAATGTCGACAAGCAATTGTTCATCTCTTGATTTCAGAATCTGTGGCTAAAGGACATGTAATGCTAGCTAAGTCTCTTCGCCTTTATTTGAGAGCTAGCTTGCATTCATGGGTTTATTTGAAGGCATGTGATGTTATTTTGGAAAAAAGCATTCCTTCCATTTCTCTTTCTCCTTGTCAATTCAAACTGTTAAGGCAGGAGAGCACTGTTGGGAAAGATGGTCTAGATGATTTTCACGGCCACAGGAATCACATTGATGAAAAATTGCATGGAAAAGCTACTTCGGGTGTCTTCTTGGATACCCTAAATTGGTCGATCCACAATGAAGTTGTTGCAGCTCTCTCTAATGAATCAAGTAACAAATCAGAGGAAGAGGTTGCAAACCAATCTCAGAATCAAAAGGGATTACAAAGTCTTGTACGACTATGGTATATTGCCCAGCTTGAGGCAATTACTTCCATTGCAGGGGTGGAAGTTAATTCATTGGTTATCTGTAGTAAAACCTTATTTCACTTTGAATTAAGCTGTTACAAGATTGGGAGTGATGAGAAGCTTCAGCTGACTTCTTCAGAAAACATTGGCAAGGCAGTTGAAATGTTATTTTTATTGACCTTTGGTGAAGAAGATGTGCATCATGGGAAACTTAATGCATATGAAGTTTCACTCGGTGGAAAACTCAATAACATCAAAATTGAGGATCTGAAGCATTTTGAAAGAGTGAAATTGGGTGATCCTGTTTCTCTTCGTTTTATGGAAGAGAGAGCCTCCGAAAACCACATTAGTTCAAATGTATCTTTCCTTGGCTGGATGGAGAAAACTGCTTCTGATGTTATCAATAGGATGCTGGTATTGTTATCTTCAGCATGTGGTTTGTGGTTTGGCTCATGCAACCTGCCACTTCCTGGACATGTTCTAATATATGGACCTCCGGGTTCTGGGAAAACTATACTAGCAATGAATGTGGCAAAATCCCTTGAGAATCGTGAAGACATCTTAGCACACATAATTATTGTTTCCTGCTCAAAACTTGCTTTGGAGAAGGTCTCAATTATTCGCCAAGAACTTGCAAACCATATAACTGAAGCTATAAACCATGCACCTTCTGTTGTCATCTTTGATGATCTTGATAGTATAATTTCTACCCCTGATTCTGAAGGATCTCAGCCATCAATGTCTGTTGCTGGTCTCACAGATTTTCTTGCTGACATTCTTGATGAATATGGGGAGAAGAGGCGTAAATCATGTGGATTTGGACCAATAGCTTTCATAGCAACCATACAGTCCCTAGAAAATATGCCACAATCTTTGAGCTCTTCAGGACGGTTTGACTTTCATATTAAGCTGCCTGCTCCTGCAGCTTCTGAGCGCAAGGCTATGTTGAAGAATATAATACAAAGGCGACACTTGCAATGTAATGATGACATCCTACTTGATGTGGCTGTAAAATGTGATGGTTATGATGGCTATGATCTGGAAACATTAGTTGACAGAACTGTACATGCTGCTGTTCGCCGTTTTCTGCCATCTAATGCCATTTATGAGCATGAGGGTCCTGCTTTACTACAGGAGGATTTCTCTCGGGCAATGCATGATTTTCTCCCAGTTTCAATGCGTGACATCACAAAGTCTATTTCTGATGATGGCCGTTCTGGATGGGACGATGTTGGTGGTCTTGTTGATATTCGAAATGCTATTAAAGAGATGATAGAATTGCCATCAAAGTTTCCAAAAACTTTTGCACAAGCACCATTAAGGTTGCGGTCAAATATCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACTTAGTCGGTGCTGCTGCGGCTGCTTCTTCACTTCGATTCATATCAGTGAAAGGGCCAGAACTGTTAAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGAGATATATTCTCCAAAGCAGCAGCTGCAGCACCATGCCTACTTTTTTTTGATGAATTTGATTCTATAGCTCCTAAGAGAGGGCACGACAATACTGGAGTAACTGATCGTGTTGTCAATCAATTTTTGACGGAGTTAGACGGTGTTGAGATTTTAGCTGGTGTTTTTGTGTTTGCTGCAACCAGCAGTAGACCCGACTTACTGGATGCGGCACTGTTGAGACCGGGTAGATTAGATCGTCTTCTATTTTGTGACTTTCCATCATGGCATGAGAGATTGGAAATTCTTACTGTACTTTCTAAAAAGTTACCAATGGCCAGTGATATTGATTTAGCTGCAGTAGCTAATGTGACTGAAGGATTCAGTGGAGCTGATCTCCAAGCTCTCCTCTCAGATGCACAGCTTGCTGCAGTTCATGATATTCTTGACAATATCGATACATCTAGATCAGAGAAAACACCAGTTATTACCGATGATCTTCTAAAACTCACTGCATCCAATGCAAGACCATCTGTTTCTGAGGAAGAGAAAAGGCGACTCTACAGTATTTATCGCCAGTTCCTGGATTCCAAGAAATCTGTTGCTGCCCAGTCAAGGGATGCAAAAGGCAAGAGGGCAACTCTAGCGTGA 3399 0.4187 MEFYVEAVGTIENCFASLPLPLIQTLQSTSSSSLPPILALELRSSSHPPHSWFVAWSGATSSSSSPSSIQLSQQFAECLSLPIHSPLQVKVASNVPHASSVSIEPDTEDDWEILELNSEQAEAQILNQIRIVHEGMRFPLRLNGHTVITFHVASVFPKNAVVQLMPGTEVDVAPKTRKRNSDSLVDSHVGSNSKDHTAKMLVRLQEPNDLCRTSTHVKGVKLHVGLTPVAFVHPETAKRFSFNMLQLVSIVPRESKENVNHSRTKSNNMKIKGGSAINQDENGDTDKKECRQAIVHLLISESVAKGHVMLAKSLRLYLRASLHSWVYLKACDVILEKSIPSISLSPCQFKLLRQESTVGKDGLDDFHGHRNHIDEKLHGKATSGVFLDTLNWSIHNEVVAALSNESSNKSEEEVANQSQNQKGLQSLVRLWYIAQLEAITSIAGVEVNSLVICSKTLFHFELSCYKIGSDEKLQLTSSENIGKAVEMLFLLTFGEEDVHHGKLNAYEVSLGGKLNNIKIEDLKHFERVKLGDPVSLRFMEERASENHISSNVSFLGWMEKTASDVINRMLVLLSSACGLWFGSCNLPLPGHVLIYGPPGSGKTILAMNVAKSLENREDILAHIIIVSCSKLALEKVSIIRQELANHITEAINHAPSVVIFDDLDSIISTPDSEGSQPSMSVAGLTDFLADILDEYGEKRRKSCGFGPIAFIATIQSLENMPQSLSSSGRFDFHIKLPAPAASERKAMLKNIIQRRHLQCNDDILLDVAVKCDGYDGYDLETLVDRTVHAAVRRFLPSNAIYEHEGPALLQEDFSRAMHDFLPVSMRDITKSISDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNILLYGPPGCGKTHLVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILAGVFVFAATSSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSKKLPMASDIDLAAVANVTEGFSGADLQALLSDAQLAAVHDILDNIDTSRSEKTPVITDDLLKLTASNARPSVSEEEKRRLYSIYRQFLDSKKSVAAQSRDAKGKRATLA 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01863 1132 SUPERFAMILY ADC-like 10 82 IPR009010 -
Vifa6g01863 1132 MobiDBLite consensus disorder prediction 258 284 - -
Vifa6g01863 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 580 818 IPR027417 -
Vifa6g01863 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 840 1102 IPR027417 -
Vifa6g01863 1132 PANTHER AAA-FAMILY ATPASE 224 1109 - -
Vifa6g01863 1132 FunFam Peroxisome biogenesis factor 1 96 175 - -
Vifa6g01863 1132 Gene3D - 1010 1089 - -
Vifa6g01863 1132 MobiDBLite consensus disorder prediction 264 280 - -
Vifa6g01863 1132 FunFam Peroxisome biogenesis protein 1 545 739 - -
Vifa6g01863 1132 CDD RecA-like_PEX1_r2 849 1007 - -
Vifa6g01863 1132 Gene3D - 540 739 IPR027417 -
Vifa6g01863 1132 Gene3D - 96 176 - -
Vifa6g01863 1132 Pfam AAA+ lid domain 1031 1070 IPR041569 -
Vifa6g01863 1132 Pfam ATPase family associated with various cellular activities (AAA) 592 737 IPR003959 GO:0005524|GO:0016887
Vifa6g01863 1132 Pfam ATPase family associated with various cellular activities (AAA) 878 1006 IPR003959 GO:0005524|GO:0016887
Vifa6g01863 1132 SMART AAA_5 588 740 IPR003593 GO:0016887
Vifa6g01863 1132 SMART AAA_5 874 1011 IPR003593 GO:0016887
Vifa6g01863 1132 Gene3D - 839 1102 IPR027417 -
Vifa6g01863 1132 Gene3D - 740 833 - -
Vifa6g01863 1132 Pfam Peroxisome biogenesis factor 1, N-terminal 100 174 IPR015342 GO:0005524|GO:0005777|GO:0007031
Vifa6g01863 1132 FunFam Nuclear valosin-containing protein-like 836 1015 - -
Vifa6g01863 1132 SUPERFAMILY Cdc48 domain 2-like 96 174 IPR029067 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01863 Vifa-Chr6 697674980 697696538 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01863 589 795 Calmodulin-binding Proteins AT3G56690 29.808 1.52e-11 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01863 K13338 - gmx:100803882 1773.06