Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01861 ATGCTGGGTGGGTTATACGGCGACCTACCTCCACCGTCTTCCGCCGAAGAAGACAAGCCAACCACCAATGTCTGGTCCAGCAGCACCAAAATGGCCCCCGCTACTCTCCGTAAACCCTCCTCTATTTCCACTCCTCCTCATACTCTTCTCAGATCCCAAAACAAACCTAAAATCTCCAATTCGAAACCGATTTTGTCCACGGCACCGACGATACTCGCTCCCGCGGTAAACGAGGTGGTGCAGGTGGTGCAACCGGCTCTGGTGGGTGTGCAGTCGACGGTGTTGGAAGAGTATGATCCAGCAAGGCCTAATGATTATGAAGAGTATCGGAGGGAGAAGAAGAGGAAGGCTAGGGAGGCGGAGATGATGAGGGAGCTAGAGAGAAGGCGGGAGGAGGAGGAAGAGAGGGAGAGAGAAAGGGAAAGAGAGAGAAAAAAGGAAAGAGAAAGAGATAGGGATAGGGATCAGGGTGATTCAAGATTGAATATTTCGGGTGAGGAAGCGTGGAGGAGGCGTGTGGGGATGAGTGCTGGTGGAAGTGGAGGGGCGGTGCCGAGGTCGCCGTCACCACCGGGTAATGTGGATGGGTTTACTATTGGGAAGTCGGAGACGGGAGGATTGGGGGTTGGTGCTGGTGGGCAGATGACTGCTGCTCAGAGGATGATGGCGAAGATGGGGTGGAAAGAAGGGCAAGGGCTTGGGAAGCAAGAACAAGGGATTACTACTCCTTTGATGGCTAAGAAAACGGATAGACGAGCCGGGGTTATTGTCAATGCTAGTGACAGTAAGTCTGATAAGAAAGTCAAGAGTGTTAACATCAATGGGGTTCCTACCAGAGTGATGCTACTTAGAAATATGGTGGGGCCTGGTGAGGTAGATGATGAGCTGGAAGATGAGGTAGGATCAGAATGTGCCAAGTATGGAACAGTAACCCGAGTTCTGATATTTGAGATAACAGAGCCAAATTTTCCCACCGACGAAGCAGTAAGAATCTTTGTGCAGTTTGAGAGATCCGAAGAAACAACTAAAGCGCTTGTTGACCTTGATGGCCGATACTTTGGAGGTAGAATAGTGCGTGCCACATTTTATGATGAGGATAAGTTTAGCAAGAATGAGTTAGCTCCTATGCCTGGAGAAATTCCTGGCTTCACCTAG 1155 0.503 MLGGLYGDLPPPSSAEEDKPTTNVWSSSTKMAPATLRKPSSISTPPHTLLRSQNKPKISNSKPILSTAPTILAPAVNEVVQVVQPALVGVQSTVLEEYDPARPNDYEEYRREKKRKAREAEMMRELERRREEEEERERERERERKKERERDRDRDQGDSRLNISGEEAWRRRVGMSAGGSGGAVPRSPSPPGNVDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDSKSDKKVKSVNINGVPTRVMLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPTDEAVRIFVQFERSEETTKALVDLDGRYFGGRIVRATFYDEDKFSKNELAPMPGEIPGFT 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01861 384 Coils Coil 106 156 - -
Vifa6g01861 384 ProSiteProfiles G-patch domain profile. 214 260 IPR000467 GO:0003676
Vifa6g01861 384 SMART rrm2_1 280 361 IPR003954 GO:0003676
Vifa6g01861 384 PANTHER SPLICING FACTOR 45 SPF45 1 375 IPR040052 GO:0045292
Vifa6g01861 384 MobiDBLite consensus disorder prediction 100 167 - -
Vifa6g01861 384 SMART G-patch_5 212 258 IPR000467 GO:0003676
Vifa6g01861 384 MobiDBLite consensus disorder prediction 97 208 - -
Vifa6g01861 384 Pfam G-patch domain 217 256 IPR000467 GO:0003676
Vifa6g01861 384 PIRSF SPF45 3 380 IPR040052 GO:0045292
Vifa6g01861 384 CDD RRM_UHM_SPF45 277 373 IPR034653 -
Vifa6g01861 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 365 IPR000504 GO:0003723
Vifa6g01861 384 Gene3D - 275 373 IPR012677 -
Vifa6g01861 384 MobiDBLite consensus disorder prediction 16 62 - -
Vifa6g01861 384 MobiDBLite consensus disorder prediction 1 62 - -
Vifa6g01861 384 FunFam Putative splicing factor 45 278 364 - -
Vifa6g01861 384 SUPERFAMILY RNA-binding domain, RBD 278 368 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01861 220 255 C2H2 Transcription Factor Family AT5G26610 61.111 9.34e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01861 K12840 - gmx:100800998 491.5