Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa6g01861 | ATGCTGGGTGGGTTATACGGCGACCTACCTCCACCGTCTTCCGCCGAAGAAGACAAGCCAACCACCAATGTCTGGTCCAGCAGCACCAAAATGGCCCCCGCTACTCTCCGTAAACCCTCCTCTATTTCCACTCCTCCTCATACTCTTCTCAGATCCCAAAACAAACCTAAAATCTCCAATTCGAAACCGATTTTGTCCACGGCACCGACGATACTCGCTCCCGCGGTAAACGAGGTGGTGCAGGTGGTGCAACCGGCTCTGGTGGGTGTGCAGTCGACGGTGTTGGAAGAGTATGATCCAGCAAGGCCTAATGATTATGAAGAGTATCGGAGGGAGAAGAAGAGGAAGGCTAGGGAGGCGGAGATGATGAGGGAGCTAGAGAGAAGGCGGGAGGAGGAGGAAGAGAGGGAGAGAGAAAGGGAAAGAGAGAGAAAAAAGGAAAGAGAAAGAGATAGGGATAGGGATCAGGGTGATTCAAGATTGAATATTTCGGGTGAGGAAGCGTGGAGGAGGCGTGTGGGGATGAGTGCTGGTGGAAGTGGAGGGGCGGTGCCGAGGTCGCCGTCACCACCGGGTAATGTGGATGGGTTTACTATTGGGAAGTCGGAGACGGGAGGATTGGGGGTTGGTGCTGGTGGGCAGATGACTGCTGCTCAGAGGATGATGGCGAAGATGGGGTGGAAAGAAGGGCAAGGGCTTGGGAAGCAAGAACAAGGGATTACTACTCCTTTGATGGCTAAGAAAACGGATAGACGAGCCGGGGTTATTGTCAATGCTAGTGACAGTAAGTCTGATAAGAAAGTCAAGAGTGTTAACATCAATGGGGTTCCTACCAGAGTGATGCTACTTAGAAATATGGTGGGGCCTGGTGAGGTAGATGATGAGCTGGAAGATGAGGTAGGATCAGAATGTGCCAAGTATGGAACAGTAACCCGAGTTCTGATATTTGAGATAACAGAGCCAAATTTTCCCACCGACGAAGCAGTAAGAATCTTTGTGCAGTTTGAGAGATCCGAAGAAACAACTAAAGCGCTTGTTGACCTTGATGGCCGATACTTTGGAGGTAGAATAGTGCGTGCCACATTTTATGATGAGGATAAGTTTAGCAAGAATGAGTTAGCTCCTATGCCTGGAGAAATTCCTGGCTTCACCTAG | 1155 | 0.503 | MLGGLYGDLPPPSSAEEDKPTTNVWSSSTKMAPATLRKPSSISTPPHTLLRSQNKPKISNSKPILSTAPTILAPAVNEVVQVVQPALVGVQSTVLEEYDPARPNDYEEYRREKKRKAREAEMMRELERRREEEEERERERERERKKERERDRDRDQGDSRLNISGEEAWRRRVGMSAGGSGGAVPRSPSPPGNVDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDSKSDKKVKSVNINGVPTRVMLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPTDEAVRIFVQFERSEETTKALVDLDGRYFGGRIVRATFYDEDKFSKNELAPMPGEIPGFT | 384 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa6g01861 | 384 | Coils | Coil | 106 | 156 | - | - | |
Vifa6g01861 | 384 | ProSiteProfiles | G-patch domain profile. | 214 | 260 | IPR000467 | GO:0003676 | |
Vifa6g01861 | 384 | SMART | rrm2_1 | 280 | 361 | IPR003954 | GO:0003676 | |
Vifa6g01861 | 384 | PANTHER | SPLICING FACTOR 45 SPF45 | 1 | 375 | IPR040052 | GO:0045292 | |
Vifa6g01861 | 384 | MobiDBLite | consensus disorder prediction | 100 | 167 | - | - | |
Vifa6g01861 | 384 | SMART | G-patch_5 | 212 | 258 | IPR000467 | GO:0003676 | |
Vifa6g01861 | 384 | MobiDBLite | consensus disorder prediction | 97 | 208 | - | - | |
Vifa6g01861 | 384 | Pfam | G-patch domain | 217 | 256 | IPR000467 | GO:0003676 | |
Vifa6g01861 | 384 | PIRSF | SPF45 | 3 | 380 | IPR040052 | GO:0045292 | |
Vifa6g01861 | 384 | CDD | RRM_UHM_SPF45 | 277 | 373 | IPR034653 | - | |
Vifa6g01861 | 384 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 269 | 365 | IPR000504 | GO:0003723 | |
Vifa6g01861 | 384 | Gene3D | - | 275 | 373 | IPR012677 | - | |
Vifa6g01861 | 384 | MobiDBLite | consensus disorder prediction | 16 | 62 | - | - | |
Vifa6g01861 | 384 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
Vifa6g01861 | 384 | FunFam | Putative splicing factor 45 | 278 | 364 | - | - | |
Vifa6g01861 | 384 | SUPERFAMILY | RNA-binding domain, RBD | 278 | 368 | IPR035979 | GO:0003676 |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa6g01861 | 220 | 255 | C2H2 Transcription Factor Family | AT5G26610 | 61.111 | 9.34e-07 | 48.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa6g01861 | K12840 | - | gmx:100800998 | 491.5 |