Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01858 ATGAAGCTCCGTTTTCCAATTTTTCTCATTTCGCTTCTCCTCGTGTTTCTCTTCCCATTCTCTTCTTCATCGAAACCCTTAGACCCGTTCCTTGGAATCGCACCCCAAGATGTAAAATATTTCAAGACTCATGATGTGATTAGATGTAGAGACGGATCTGTGAATTTCATTAAAGACCAGCTCAATGACGATTTCTGTGACTGCCCCGATGGAACCGATGAACCTGGTACATCTGCTTGTCCGCGTGGGAAATTTTATTGTCAGAATGCTGGACATGCTCCGGTGTATCTGTTTTCGTCTAGAGTTAATGATGGAATTTGCGATTGCTGTGATGGAAGTGATGAATATGATGGTCAAGCAAAGTGCCTAAATACCTGCTGGGAGGCCGGGAAAGTTGCTCGGGATAAGCTTAGAAAAAAGATTGCTACTTATCAAGAAGGTGTCAAACTGCGAAAACAAGAAATTGAACAAGCAAAGTTATCAATGGAGAAGGATGGTGCAGAGCTTTCAAAATTGAAAAATGAAGAAAGTATACTTAAAGGGGTTGTGAAACAGCTAAAGGACCATAAAGAACAAATAGAGAAGATAGAGGAGAAGGAGCGTCTACAGAAGGAAAAAGAAGAGAAGGAGAAGAAAGAGGCCGAAGAGAAGGCTAGTGAAAAAACAATTAAAGTCGATGAAGAAGACACAAAACACGAGGATGAAGCTGAAACGGATTCACACAGTGAAGACAATACTGTGGCAAGTAATCATGATAAAATTGAAGTTCAAGAGGATTCTCTGGTTCAAGAGGATGAAGCTGGGGAAAAGCTAGCCGACACACTTGATAATTCTGTTGAAGTCACTGATGCCCCTGGAAGTGAAGGATCATTGCTTAATCAAGTGGAAGAGAATGCAAAAGAAGCTGAGAGAGAACCTGCTGTTGAATCTGAAATTGATTTGACGACTGGAAAGACAGAGTCTTCTAGCGAAGTCATCAATACGGGTAGAGACGTATCTGAAAATACTGATGGATTATCAAAGGAAGAATTGGGCAGGCTTATTGCTTCTCGTTGGGTCAAAGAAGATGTTGTCAAAGAAGATGTTGGTGCGAGAAGTGCTGAAGCTGACACTGCATTAGACAATGAATATCAGGAAGATATTGCACACGGGACAACTAATGGTGAGAGTGAAGGATATGCTTCTGAAACTGACGATGAAAACAACAAATACGACGAAGATGTAAACGATGACGAATTTCATGATGATGAGAACGACGACCTTAGTTCCTCATACAAATCTGACATTGAGACCGAACCAGACTTGTCAGATTTTAGCACAACAGAAGATCCTTCTTGGTTAGAGAAAATACAGAAATCTGTATGGAATATTTTTCAGTCTGTCAATATATTCCAGACACCTGTGAACCAATCAGACGCTGCTCGTATACACAAGGAATATGACGAATCAAGTACTAAGTTGTCTAAAATACAGTCTAGAATATCAAGCCTGACGCAAAAGCAAAAACTTGATTTTGGTCCAGCAAAGGAGTTTTATTCATTCTATGGTCGTTGCTTTGAGAGCAAGCAGAACAAGTACACTTACAAAGTCTGCCCCTATAAACAAGCTACTCAGGAGGAGGGCCATTCCACCACCCGTTTGGGTGGCTGGGACAAATTTGAGGATTCACACAAAGTAATGGTGTTTTCTAGTGGTGACAAATGCTGGAATGGTCCTGATAGGAGTTTGAAGGTCAAGCTAAAATGCGGGTTGTCGAATGAGATTACTGATGTAGATGAACCAAGCCGTTGCGAGTATGTAGCTTTATTAGCAACCCCAGCCCTTTGTCAGGAAGAAAAGCTGAAGGAATTACAACAAAAGCTAGACTTACTGAATTCGGAACAACCAGGAAGCCATGATGAGTTGTGA 1908 0.4119 MKLRFPIFLISLLLVFLFPFSSSSKPLDPFLGIAPQDVKYFKTHDVIRCRDGSVNFIKDQLNDDFCDCPDGTDEPGTSACPRGKFYCQNAGHAPVYLFSSRVNDGICDCCDGSDEYDGQAKCLNTCWEAGKVARDKLRKKIATYQEGVKLRKQEIEQAKLSMEKDGAELSKLKNEESILKGVVKQLKDHKEQIEKIEEKERLQKEKEEKEKKEAEEKASEKTIKVDEEDTKHEDEAETDSHSEDNTVASNHDKIEVQEDSLVQEDEAGEKLADTLDNSVEVTDAPGSEGSLLNQVEENAKEAEREPAVESEIDLTTGKTESSSEVINTGRDVSENTDGLSKEELGRLIASRWVKEDVVKEDVGARSAEADTALDNEYQEDIAHGTTNGESEGYASETDDENNKYDEDVNDDEFHDDENDDLSSSYKSDIETEPDLSDFSTTEDPSWLEKIQKSVWNIFQSVNIFQTPVNQSDAARIHKEYDESSTKLSKIQSRISSLTQKQKLDFGPAKEFYSFYGRCFESKQNKYTYKVCPYKQATQEEGHSTTRLGGWDKFEDSHKVMVFSSGDKCWNGPDRSLKVKLKCGLSNEITDVDEPSRCEYVALLATPALCQEEKLKELQQKLDLLNSEQPGSHDEL 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01858 635 Gene3D - 511 609 IPR009011 -
Vifa6g01858 635 ProSiteProfiles MRH domain profile. 516 611 IPR044865 -
Vifa6g01858 635 MobiDBLite consensus disorder prediction 201 273 - -
Vifa6g01858 635 MobiDBLite consensus disorder prediction 419 433 - -
Vifa6g01858 635 SUPERFAMILY Mannose 6-phosphate receptor domain 521 609 IPR009011 -
Vifa6g01858 635 PANTHER N-LINKED OLIGOSACCHARIDE PROCESSING 11 635 IPR039794 -
Vifa6g01858 635 Pfam Glucosidase II beta subunit-like protein 477 634 IPR036607 -
Vifa6g01858 635 MobiDBLite consensus disorder prediction 201 338 - -
Vifa6g01858 635 MobiDBLite consensus disorder prediction 358 442 - -
Vifa6g01858 635 Coils Coil 155 231 - -
Vifa6g01858 635 MobiDBLite consensus disorder prediction 314 334 - -
Vifa6g01858 635 MobiDBLite consensus disorder prediction 400 418 - -
Vifa6g01858 635 MobiDBLite consensus disorder prediction 297 311 - -
Vifa6g01858 635 Pfam Glucosidase II beta subunit-like 27 172 IPR028146 -
Vifa6g01858 635 MobiDBLite consensus disorder prediction 280 294 - -
Vifa6g01858 635 Coils Coil 607 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01858 Vifa-Chr6 696918343 696928899 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01858 21 635 Calmodulin-binding Proteins AT5G56360 57.416 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01858 K08288 - gmx:100807083 857.44