Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01828 ATGGAGGAGAAGCAGAAGAAGTTTGTTTGTAAGTATTGTTCCAAGAGATATCCTTGTGGGAAGTCTCTTGGTGGTCATATAAGAACACATATGAGTGAACAAAGAACTCATAATGCTGCTGCTGCTGCTGTTGCTGATACGCGTGTTTTCAAGCAAGATGCTGTTAGAAACAAGAGAGATTTGTCGTGTTCCGAAACTGGTGCCGATGGAAATACCAGTTATGGTCTTAGAGAGAATCCTAGGAAAACAATGAGGTTTGTGCATTCGAATCAGCATCATCATGGTGAACGTCGTCATGATGATGCTGCTGCAAATGCGGATATGGAGCATGAAATGATCAGGTTCTGTAAAGAATGTGGGAAGGGCTTTCCTTCACTGAAAGCTCTTTGTGGTCACATGGCTTCTCATTCTGAGAAAGAGAAAAAGATCAATAGATTTGATCAAGTCATGGAAGATAGTCAATCTGATGATGATACTGATGATGATGATGCAACAACAATGAATCTGAGGAAATCGAAGAGAAGAATTAGGTTCAAGTCTCTTACTCTTTCGAATCAAAATCAACCTTCTTCTTGTTCTGTTGATGGTTCTTCATCTATGTCAGAGATGGAACAAGAACAACAACAAGAGGTTGCTATGTGTTTGATGCTTTTGTCTAGAGATTTTTTTAGTCATAAGGCTCGTTTTGTTTCTGAATCTTGTGATAATAATAATAATAATAACAACTCGGTTGTTTTAGAGACGAAATCCTACATTTCTGATAAAAAGATTGTTATTAGAAATTGTAACAAATTTGTCTCTAATAATGATCATCATGAATCTGCGGAGAAGAAGCTGAAGCTGCTGAAGTCTGTTGGGATTGGTGTTTCGAATAAATCTGATTCCAGGGATTTCAGATATGCTTCCAAGATCAAAACTGTAGATTCAAAACTTTCAAACTGCGAATTCAAGAGACCGGAAATGGAAGAAGATAAATCTGGATTTGTGGATTGCAAAAGCAAATACAATGTGACATCAACTGTGGTTAAGAAATCAGGGATGAATAAGGATTTGGATCATGATTCGAGAATGAAATCGAGCTATGAAGGATTTGGTTTTAACAACAACAATACCAAGAATGAAGAAATCAATGATGTTAGAAACGGTTTGAAATACGAGTTTTATGGTAGTGAAAAGGACGATGATTCTTCTTATGTTTCAACAACAGATGAAGAGAGTGATGAAGAAAACAGTTCAGAAAGTGATTCTTTCCCTGCTGCCAAGTCTCATAACAGTAAAAAGAAATCAAGTAACAAAGCTAAGAAGAAGTTGAAGTCAAAGAAAAGCAAGGAATATGAGTGTCCAATTTGCTACAAAACTTTCAGGTCAGGACAAGCATTAGGAGGACATAAAAGATCACATTTTGTTGGAGGATCTGAAGAGAACACTACTTTTGTCATCAAACAAAATGCTGCTGCTCCTTGTTTGATTGATCTCAATCTTCCTGCTCCTGTTGATGAATAA 1503 0.3686 MEEKQKKFVCKYCSKRYPCGKSLGGHIRTHMSEQRTHNAAAAAVADTRVFKQDAVRNKRDLSCSETGADGNTSYGLRENPRKTMRFVHSNQHHHGERRHDDAAANADMEHEMIRFCKECGKGFPSLKALCGHMASHSEKEKKINRFDQVMEDSQSDDDTDDDDATTMNLRKSKRRIRFKSLTLSNQNQPSSCSVDGSSSMSEMEQEQQQEVAMCLMLLSRDFFSHKARFVSESCDNNNNNNNSVVLETKSYISDKKIVIRNCNKFVSNNDHHESAEKKLKLLKSVGIGVSNKSDSRDFRYASKIKTVDSKLSNCEFKRPEMEEDKSGFVDCKSKYNVTSTVVKKSGMNKDLDHDSRMKSSYEGFGFNNNNTKNEEINDVRNGLKYEFYGSEKDDDSSYVSTTDEESDEENSSESDSFPAAKSHNSKKKSSNKAKKKLKSKKSKEYECPICYKTFRSGQALGGHKRSHFVGGSEENTTFVIKQNAAAPCLIDLNLPAPVDE 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01828 500 Gene3D Classic Zinc Finger 388 471 - -
Vifa6g01828 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 445 467 IPR013087 -
Vifa6g01828 500 SUPERFAMILY beta-beta-alpha zinc fingers 115 467 IPR036236 -
Vifa6g01828 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Vifa6g01828 500 SUPERFAMILY beta-beta-alpha zinc fingers 5 35 IPR036236 -
Vifa6g01828 500 SMART c2h2final6 445 467 IPR013087 -
Vifa6g01828 500 SMART c2h2final6 8 30 IPR013087 -
Vifa6g01828 500 SMART c2h2final6 114 136 IPR013087 -
Vifa6g01828 500 MobiDBLite consensus disorder prediction 392 443 - -
Vifa6g01828 500 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Vifa6g01828 500 Pfam C2H2-type zinc finger 445 467 - -
Vifa6g01828 500 Pfam C2H2-type zinc finger 8 33 - -
Vifa6g01828 500 Pfam C2H2-type zinc finger 116 138 - -
Vifa6g01828 500 MobiDBLite consensus disorder prediction 425 439 - -
Vifa6g01828 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 8 35 IPR013087 -
Vifa6g01828 500 ProSitePatterns Zinc finger C2H2 type domain signature. 447 467 IPR013087 -
Vifa6g01828 500 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 500 - -
Vifa6g01828 500 ProSitePatterns Zinc finger C2H2 type domain signature. 10 30 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01828 Vifa-Chr6 690102581 690104083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01828 1 500 C2H2 Transcription Factor Family AT1G26610 36.994 1.96e-63 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa6g01828 zf-C2H2_6 2.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01828 - - psat:127106931 695.271