Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01823 ATGGTGATTCTGTTTCGGTTGTGCCTGGTCATTGGTCTTCGTTTTCGGGTTTTACTAAGTTGGATGGGGTTTCTCGAGGAAATCCCATTGCATCAGAAATCATCACTGGTGTCGCCGCCGAAACCACTTGATCAAAGTGTTGCTACAGGTGATACTGTTATTGGTGGAACATTGAATGAGAATAGAATCTTGCATGTTAAGGCAACCAAAGTTGGATCGGAAAGTGCTCTTTCACAGATTGTTCGACTTGTTGAGTCTGCACAAATGGCCAAGGCTCATGTGCAGAATACCAATCTTCCTCCAAATGGCACACTCTTGCTTGATGAGAATTCTGATTTTGGTGAGAATATAATTGTTCGTGTTATCAATTCTTGTGTGTGGTCTGAGAGTCAAAGTTTCAACGATGATGTTATGACAAATCGTTCAAACACTGTTGTCGATGAAATTCTACCCATTTCACATGTTGTGTTCAGTGATAATGAAAAGAGGTTGAATAGATTGAAAGAAAAGTCTCTAAGGTTTTTTCCTTCTTGCGGGTCATTTCAACAATATTCTGAAATGATAGATTTTGAATCTTCAATACCTCTCATGGTCGCGCCTCAATTCAACGATGGATTGTTTCATGATGATGTTGATTTTGCAATTCCGCTGAAACCATCAGATCAAATTGTTGCTGGGTTTTTGTGTTGTGAAGAAAGTGAATTCCAAATGGATGTAGCTGTAGAGGAGAAAAAGCTACCAAAAAGAGAAACTTGGTCTGTTCACAAGTTTGGTGGAACTTGTGTGGAAAGTTCAGGGAGGATAAATAATGTTGCAGGTGTAATTATCAGTGATGATTCTGAGAGGAAACTAGTTGTGGTGTCTGCTATGTCAAAAGTAACAGATATAATGTATGATCTCATACACAAAGCTCAATCTCAGGATAAGTCTTATATATCTACATTGGATGTTGTTGAAGAGAAGCACAGTTTAAGTGCACATGAGTTATTTGATGGAGTTGATCTTGCTACTTTCTTAGCCAATTTGCATCAAGATATTAGAAACTTAAAGGCAATGCTTCATGCTATAGACATAGTTGGTCATGCTACAGAATATGTTACTGACTTAGTTGTGGGACATGGGGAGTTATGGTACGCACAAATATTGTCTTATGTTTTTAAGAAGAAAGGGACTGATTGTATATGGATGGACACAAGGCAAGTCCTCATTGTGAATTCTACTAGTGCTGATCAACAAGCACGCGTCATAATATTCCAACTACTCTCGAGAGATGGAAGTGACTTCTTAGCAGCAATTATGGCTGCTTTATTTCGGGCTCGTCAGGTCACCATTTGGACAGATGTTGCTGGTGTGTACAGTGTAGATCCTAGAAAAGTTAGTGAGGTCGTGATTTTGAAGACACTATCTTATCGAGAGGCATCAAAGATATATGAAGACAAAAATTATGTCAACGGCTTTACAACAATAGACAACTTGGCACTTATAAATATGAAAGGAACTGGAATGGCTGGTGTTCCAGGTACTGCCAGTACTATTTTTAGAGCAGTAAAAGACGTTGGAGCCCATGTTATTATGATATCTCAAGCTAGTAATGAGCATTTTGTGTGTTTTGATGTGCATGAGAAAGAAGTAAAAACTAGTAATGAGTATTCTAGAACCTTGAGGACAAGGTTCAAGTGA 1680 0.3857 MVILFRLCLVIGLRFRVLLSWMGFLEEIPLHQKSSLVSPPKPLDQSVATGDTVIGGTLNENRILHVKATKVGSESALSQIVRLVESAQMAKAHVQNTNLPPNGTLLLDENSDFGENIIVRVINSCVWSESQSFNDDVMTNRSNTVVDEILPISHVVFSDNEKRLNRLKEKSLRFFPSCGSFQQYSEMIDFESSIPLMVAPQFNDGLFHDDVDFAIPLKPSDQIVAGFLCCEESEFQMDVAVEEKKLPKRETWSVHKFGGTCVESSGRINNVAGVIISDDSERKLVVVSAMSKVTDIMYDLIHKAQSQDKSYISTLDVVEEKHSLSAHELFDGVDLATFLANLHQDIRNLKAMLHAIDIVGHATEYVTDLVVGHGELWYAQILSYVFKKKGTDCIWMDTRQVLIVNSTSADQQARVIIFQLLSRDGSDFLAAIMAALFRARQVTIWTDVAGVYSVDPRKVSEVVILKTLSYREASKIYEDKNYVNGFTTIDNLALINMKGTGMAGVPGTASTIFRAVKDVGAHVIMISQASNEHFVCFDVHEKEVKTSNEYSRTLRTRFK 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01823 559 Gene3D - 478 559 - -
Vifa6g01823 559 ProSiteProfiles ACT domain profile. 497 559 IPR002912 -
Vifa6g01823 559 Gene3D - 26 88 - -
Vifa6g01823 559 Pfam E1-E2 ATPase 48 96 - -
Vifa6g01823 559 Gene3D - 419 475 IPR036393 -
Vifa6g01823 559 Pfam Amino acid kinase family 253 478 IPR001048 -
Vifa6g01823 559 SUPERFAMILY ACT-like 480 546 IPR045865 -
Vifa6g01823 559 PANTHER - 478 558 IPR011147 GO:0004072|GO:0004412|GO:0009067
Vifa6g01823 559 SUPERFAMILY Carbamate kinase-like 252 476 IPR036393 -
Vifa6g01823 559 ProSitePatterns Aspartokinase signature. 254 262 IPR018042 GO:0004072|GO:0008652
Vifa6g01823 559 Gene3D - 252 417 IPR036393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01823 Vifa-Chr6 689867297 689869910 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01823 50 96 Primary Pumps ATPases AT1G63440 82.979 3.26e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01823 K12524 - gmx:100812202 401.364