Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01808 ATGGTTGGGGGCGGAAATGGAGAGTGGCCTGGTGGTGGTGGGTTTAGTCCGGGTCCGATGACTCTGATTTCGAGCATGTTTGGAGACAACGATGACAGCAAGACATTCTCAGAGCTTCTCGCCGGTGCTATGTTGGATGTGGAGCATGGAGGAGGAAGAGGCGGTGGCTTATCACCGCTGGCCATGTTTAGTTCTCCACCTGAGCAATCACTAGCACAAGCCTATTCAAATGTTCAAATCCAATCTGAACATCCATTTTCTGCATCAATAGTGCCTACAAACACCTCATTGACACAACTTCAATCCGTTACATTCAACCACATTGCACAACAACACATACCAAACTCTAAGGAACCAATAGCAAAATCTCTTGATTATTCTTCCAACTCAGAACAAACATTACAACAGTCTTGTTCTGTGAATGTGGATAAAGCCAACGACGATGGCTACAACTGGAGGAAGTATGGACAGAAACAAGTGAAAGGTTGCGAGTTTCCTCGAAGTTATTACAAGTGTACACATCCAAGTTGTCCTGTGAAGAAAAAAGTCGAATGCGATATCGTTGATGGACATGTAACTCAAATTATTTACAAAGGAGAGCACATTCACGAACGCCCTCGTCCAAGCAAGCTCACAGAAGATAATTCTAACATGCAACAAGAGTTGTTGGAAACAAGTGACAGTGACGAAGAAAAGGATCATGAAACTGAGAAAAATTATGAACCTGATCTCAAAAGAAGGAACATTGTCTCGAAGCCTAGAATCATTGTGCAAACAACAAGTGATGTAGATCTATTAGAGGATGGATATAAATGGCGCAAATACGGACAGAAAGTTGTCAAAGGAAATCCGCATCCAAGGAGCTATTACAAATGCACAAGCCCGGGTTGCAATGTTAGAAAGCATATAGAGAGGGTTTCAACAGATCCTAAAGCTGTAATGACAACATATGAAGGAAAACATAATCATGATGTGCCAGCAGCTAAGACTAATAGCCACACCTTTGCCAACAATAAAAATGCATCACAGCTAAAATCACAAAATGCTATAGCTGAGATGCATAATGTGGACAGAAGGGGACAACAGCAGACTTCAGCAGTGGCAAGGCTAAGGTTGAAGGAAGAACATATACTATAG 1137 0.4222 MVGGGNGEWPGGGGFSPGPMTLISSMFGDNDDSKTFSELLAGAMLDVEHGGGRGGGLSPLAMFSSPPEQSLAQAYSNVQIQSEHPFSASIVPTNTSLTQLQSVTFNHIAQQHIPNSKEPIAKSLDYSSNSEQTLQQSCSVNVDKANDDGYNWRKYGQKQVKGCEFPRSYYKCTHPSCPVKKKVECDIVDGHVTQIIYKGEHIHERPRPSKLTEDNSNMQQELLETSDSDEEKDHETEKNYEPDLKRRNIVSKPRIIVQTTSDVDLLEDGYKWRKYGQKVVKGNPHPRSYYKCTSPGCNVRKHIERVSTDPKAVMTTYEGKHNHDVPAAKTNSHTFANNKNASQLKSQNAIAEMHNVDRRGQQQTSAVARLRLKEEHIL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01808 378 SUPERFAMILY WRKY DNA-binding domain 258 326 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa6g01808 378 FunFam WRKY transcription factor 57 252 326 - -
Vifa6g01808 378 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 99 347 IPR044810 GO:0003700
Vifa6g01808 378 SUPERFAMILY WRKY DNA-binding domain 146 206 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa6g01808 378 Pfam WRKY DNA -binding domain 147 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g01808 378 Pfam WRKY DNA -binding domain 267 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g01808 378 MobiDBLite consensus disorder prediction 222 245 - -
Vifa6g01808 378 FunFam WRKY transcription factor 132 207 - -
Vifa6g01808 378 Gene3D WRKY domain 251 327 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa6g01808 378 Gene3D WRKY domain 129 207 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa6g01808 378 SMART WRKY_cls 146 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g01808 378 SMART WRKY_cls 266 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g01808 378 ProSiteProfiles WRKY domain profile. 261 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g01808 378 ProSiteProfiles WRKY domain profile. 141 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g01808 378 MobiDBLite consensus disorder prediction 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01808 Vifa-Chr6 685461735 685464019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01808 5 40 WRKY Transcription Factor Family AT2G03340 58.333 3.68e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa6g01808 WRKY 8.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01808 - - psat:127106018 690.263