Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01800 ATGGTGAACAAGAGAAAAGCAAGAGAATGTGAAGGAAGAGAAGAGAACAGTGAAGAAGAAAACACTGAACTGAAACAAATAAGAGAGGAGGCAGCATCGATAGCCGCTCCTCTACTAAGAGTTCGAAGAGCGAAAAACCGTTTCATTGGTGTGAGGCAAAGACCTTCGGGAAGATGGGTGGCTGAGATCAAAGACACCATACAGAACATAAGACTATGGTTGGGGACTTACGATACTGGTGAAGAAGCTGCTAGAGCTTATGATGAAGCTGCACGTTTGCTTCGCGGTACAAACACCCGCACAAATTTCTTTCTTTGTCAATCTTCTAGCTATGTTCCTGCTCTTCCTCCAAAGACTGTCAAACTCCTGCTTCTTAGGCTCAAAGCCAGAAACATTGCCTCTTCTTGTGTTCCTTCTAGTAATACTGCTATTTTTCATACTAACCACTATGATGAGCAGGAAACCAACTCAGCACCTGAACCCCATTTTATTCACCAAATAGAAGAAAACTTTCTAGAAAGTTACAACGATGCTAGTTATGACTCTTCTGACATAACTACTTTTAACAGTGGCAGTGGGACTAGTGAAGAAGATTTTAACCAAGAGGGTGGCCGAGAGGATATCAGATCGGGGTATCATTATGCTAACAGTGTTGATGATGGTGGAAACAACCAGATTGTGGAGTGTAATGAAGAATTTGAAGACTGTGATGTTGGCGTCATTGACTTCCAGTTTCTGGATACCGTTGGATCATTAAGCCACTCTCACTCTTCTCCATTTGAGATAGCAGAGGAGATGGTGGGGCCAATGGCAGAGGAGAATTTTGATGTGGATGATTCACTGTTACTTAGAGAGACTTTTAGAATGAAGTATGAACGCAAATTCTCAGCTTGTCTTTACACCTTGATTGGGGTGTCAGAGTGTTTGAGACTACAAGTTGGAGAAGAAAATGGAATTGAAATATAA 966 0.4182 MVNKRKARECEGREENSEEENTELKQIREEAASIAAPLLRVRRAKNRFIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTGEEAARAYDEAARLLRGTNTRTNFFLCQSSSYVPALPPKTVKLLLLRLKARNIASSCVPSSNTAIFHTNHYDEQETNSAPEPHFIHQIEENFLESYNDASYDSSDITTFNSGSGTSEEDFNQEGGREDIRSGYHYANSVDDGGNNQIVECNEEFEDCDVGVIDFQFLDTVGSLSHSHSSPFEIAEEMVGPMAEENFDVDDSLLLRETFRMKYERKFSACLYTLIGVSECLRLQVGEENGIEI 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01800 321 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Vifa6g01800 321 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Vifa6g01800 321 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Vifa6g01800 321 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Vifa6g01800 321 FunFam ethylene-responsive transcription factor RAP2-11 46 105 - -
Vifa6g01800 321 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
Vifa6g01800 321 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Vifa6g01800 321 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 17 213 - -
Vifa6g01800 321 Coils Coil 7 30 - -
Vifa6g01800 321 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Vifa6g01800 321 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Vifa6g01800 321 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01800 Vifa-Chr6 683507266 683508231 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01800 45 103 AP2-EREBP Transcription Factor Family AT5G19790 79.661 2.90e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa6g01800 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01800 K09286 - gmx:100793940 354.755