Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01799 ATGCAAATCTTTATCCAAGATAAGGAAGGGATACCACCCGATCAACAAAGGCTTATCTTTGCAGGGAAACAATTGGAAGATGGTCGCACCCTTGCCGATTACAACATACAGAAGGAATCTACCCTCCATTTGGTGCTCCGGCTGAGAGGTGGAATGCAGATCTTTGTCAAGACATTGACTGGGAAGACCATCACCCTTGAGGTTGAATCCTCAGATACAATTGATAACATCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCTCCTGATCAGCAGAAGCTAGGAAGGCCTATCTTTGCAGGGAAACAACTTGAAGATGGAAAGACTCTTGCTGATTATAACATCCACAAGGAATCCACTCTTCATTTGGTTTTGAGACTTCGTGGGGGTATGCAAATTCCAGTTAAGACCCTCACTGGAAAGACCATAATTTTGGAGGTTGAGAGTTCAGATACTATTGATAATGTGAAAACTAAGATTCAAGATAAGGAGGGTATCCCACCAAATCAACAAAGGCTTATCTTTGCAGGGAAACAACTTGAAGCTGGAAGGACTCTTGTTGATTACAACATCCAGAAGGAATCCACTCTTCATTTGGTTTTGAGACTTCGTGGGGACAAGGAGGGAATTCGTCTAGACCAGCAGAGGCTAATTTTTGTTGATATTTGTGAAGATACTTACTGGGAAGACACTTACCTTGGAAGACACTTACTGGAAAGCTGTGACACTATTGATAATGTGAAGACAAAAATACAAGATAAGGAGGGTATTCCACCAGATCAGCAGAGGCTTATTTTTGCAGGCAAGCAGTTGGAGGATGGTCGTACCTTGGCAGATTACAATATTCAGAAAGAATCTACATTGCAACTTGTTCTTTGCCTCCGAACCTTTATGATGGGGAAAGAGACTAATTCGCCAATGATAGGAATACTTATTCCTACCTTTCATATGTCATTTAAATATTCAATGGTTTAG 975 0.4144 MQIFIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNIKAKIQDKEGIPPDQQKLGRPIFAGKQLEDGKTLADYNIHKESTLHLVLRLRGGMQIPVKTLTGKTIILEVESSDTIDNVKTKIQDKEGIPPNQQRLIFAGKQLEAGRTLVDYNIQKESTLHLVLRLRGDKEGIRLDQQRLIFVDICEDTYWEDTYLGRHLLESCDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLQLVLCLRTFMMGKETNSPMIGILIPTFHMSFKYSMV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01799 324 FunFam Polyubiquitin 5 1 51 - -
Vifa6g01799 324 FunFam Polyubiquitin 3 52 130 - -
Vifa6g01799 324 FunFam Ubiquitin-60S ribosomal protein 131 206 - -
Vifa6g01799 324 CDD Ubl_ubiquitin 52 130 - -
Vifa6g01799 324 FunFam Polyubiquitin-C 228 297 - -
Vifa6g01799 324 SMART ubq_7 52 126 IPR000626 GO:0005515
Vifa6g01799 324 SMART ubq_7 1 47 IPR000626 GO:0005515
Vifa6g01799 324 SMART ubq_7 131 202 IPR000626 GO:0005515
Vifa6g01799 324 SMART ubq_7 223 293 IPR000626 GO:0005515
Vifa6g01799 324 SUPERFAMILY Ubiquitin-like 4 51 IPR029071 -
Vifa6g01799 324 Gene3D - 131 208 - -
Vifa6g01799 324 Gene3D - 235 307 - -
Vifa6g01799 324 Gene3D - 52 130 - -
Vifa6g01799 324 Gene3D - 3 51 - -
Vifa6g01799 324 ProSiteProfiles Ubiquitin domain profile. 131 206 IPR000626 GO:0005515
Vifa6g01799 324 PRINTS Ubiquitin signature 141 161 IPR019956 -
Vifa6g01799 324 PRINTS Ubiquitin signature 183 204 IPR019956 -
Vifa6g01799 324 PRINTS Ubiquitin signature 162 182 IPR019956 -
Vifa6g01799 324 SUPERFAMILY Ubiquitin-like 51 130 IPR029071 -
Vifa6g01799 324 ProSiteProfiles Ubiquitin domain profile. 1 51 IPR000626 GO:0005515
Vifa6g01799 324 SUPERFAMILY Ubiquitin-like 238 295 IPR029071 -
Vifa6g01799 324 ProSiteProfiles Ubiquitin domain profile. 242 292 IPR000626 GO:0005515
Vifa6g01799 324 PANTHER UBIQUITIN 52 132 - -
Vifa6g01799 324 ProSiteProfiles Ubiquitin domain profile. 52 130 IPR000626 GO:0005515
Vifa6g01799 324 Pfam Ubiquitin family 239 292 IPR000626 GO:0005515
Vifa6g01799 324 Pfam Ubiquitin family 5 49 IPR000626 GO:0005515
Vifa6g01799 324 Pfam Ubiquitin family 54 128 IPR000626 GO:0005515
Vifa6g01799 324 Pfam Ubiquitin family 133 204 IPR000626 GO:0005515
Vifa6g01799 324 ProSitePatterns Ubiquitin domain signature. 248 273 IPR019954 -
Vifa6g01799 324 SUPERFAMILY Ubiquitin-like 130 207 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01799 Vifa-Chr6 683363596 683370157 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01799 5 52 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.917 1.03e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01799 K08770 - twl:119989198 455.677