Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01794 ATGAGTTCAGGAAGCAGCAAAGATAAAGAGAAGGCGCGAGTGAGCCGCACCTCACTCATACTATGGCACGCTCACCAAAACGACGCCGCTGCGGTCCGGAAGCTTCTTCAAGAAGATCCTTCGCTTGTCAATGCTACCGATTACGATAACCGCACTCCGCTTCATGTCGCTTCTCTTCACGGATGGATCGAGGTTGCTAAATGCTTGATCGAATTCGGCGCCGATGTCAACGCGCAAGATCGTTGGAAGAACACCCCTTTGGCTGATGCAGAAGGATCTAAGAGGAGTAATATAATTGAGCTACTGAAATCGCATGGAGGACTGTCTTATGGTCAAACTGGAAGCCATTTTGAACCGAGGGCGGTTCCGCCGCCGTTGCCTAATAAGTGTGATTGGGAAGTTGATCCTTCTGAGCTTGACTTCTCAAGTTCTGCGCGTATTGGAAAGGGATCTTTCGGTGAAATTTTGAAAGCCCATTGGCGTGGAACGCCAGTTGCTGTCAAGCGCATTCTTCCATCTCTTTCAGAAGATAGAATGGTGATTCAAGACTTTAGGCATGAAGTCAATTTGTTGGTGAAGCTTCGACACCCCAATATAGTTCAGTTTCTTGGAGCTGTTACTGACAGGAAGCCCCTCATGTTAATTACTGAGTATCTAAGAGGGGGTGATCTTCACCAGTACCTCAAAGATAAAGGTTCACTTAACCCTTCAACAGCTATCAACTTTTCCATGGATATTGCCAGAGGAATGGCCTATCTTCACAATGAGCCAAATGTTATAATTCATAGAGACCTAAAGCCAAGAAATGTTCTTTTAGTCAACTCTAGTGCTGATCATTTAAAAGTTGGAGATTTTGGATTGAGTAAGCTTATAACTGTCCAGAGTTCTCATGATGTATACAAGATGACTGGTGAAACTGGGAGCTATCGCTATATGGCTCCGGAAGTTTTCAAACATCGGAGGTATGAGAAGAAGGTCGACGTGTACTCCTTTGCAATGATTTTGTATGAGATGCTTGAAGGTGAACCACCTTTCGCAAGTTATGAACCTTATGATGGAGCAAAACACGCAGCTGAAGGGCACAGGCCTATTTTTCGAGCGAAGGGTTATATCCCTGAGTTGCAGGAGTTAACGTCGCAGTGTTGGGCTGCTGATATGAATCATAGACCTCATTTCATAGAGATCCTTAAGCGGCTTGAAAAGATCAAGGAAAATCTACCTTCAGATCATCACTGGCATTTGTTTACTTCATAA 1254 0.4458 MSSGSSKDKEKARVSRTSLILWHAHQNDAAAVRKLLQEDPSLVNATDYDNRTPLHVASLHGWIEVAKCLIEFGADVNAQDRWKNTPLADAEGSKRSNIIELLKSHGGLSYGQTGSHFEPRAVPPPLPNKCDWEVDPSELDFSSSARIGKGSFGEILKAHWRGTPVAVKRILPSLSEDRMVIQDFRHEVNLLVKLRHPNIVQFLGAVTDRKPLMLITEYLRGGDLHQYLKDKGSLNPSTAINFSMDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSSADHLKVGDFGLSKLITVQSSHDVYKMTGETGSYRYMAPEVFKHRRYEKKVDVYSFAMILYEMLEGEPPFASYEPYDGAKHAAEGHRPIFRAKGYIPELQELTSQCWAADMNHRPHFIEILKRLEKIKENLPSDHHWHLFTS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01794 417 FunFam Integrin-linked protein kinase family 220 415 - -
Vifa6g01794 417 Gene3D - 2 116 IPR036770 -
Vifa6g01794 417 Pfam Ankyrin repeats (3 copies) 24 105 IPR002110 GO:0005515
Vifa6g01794 417 PRINTS Tyrosine kinase catalytic domain signature 254 272 IPR001245 GO:0004672|GO:0006468
Vifa6g01794 417 PRINTS Tyrosine kinase catalytic domain signature 216 229 IPR001245 GO:0004672|GO:0006468
Vifa6g01794 417 PRINTS Tyrosine kinase catalytic domain signature 370 392 IPR001245 GO:0004672|GO:0006468
Vifa6g01794 417 Gene3D Phosphorylase Kinase; domain 1 133 220 - -
Vifa6g01794 417 SUPERFAMILY Ankyrin repeat 20 107 IPR036770 -
Vifa6g01794 417 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 85 404 - -
Vifa6g01794 417 FunFam serine/threonine-protein kinase STY46-like 134 220 - -
Vifa6g01794 417 SMART ANK_2a 49 78 IPR002110 GO:0005515
Vifa6g01794 417 PIRSF ILK 2 417 - -
Vifa6g01794 417 ProSitePatterns Protein kinases ATP-binding region signature. 147 168 IPR017441 GO:0005524
Vifa6g01794 417 ProSiteProfiles Protein kinase domain profile. 141 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01794 417 ProSiteProfiles Ankyrin repeat region circular profile. 49 81 - -
Vifa6g01794 417 CDD STKc_MAP3K-like 147 399 - -
Vifa6g01794 417 ProSiteProfiles Ankyrin repeat profile. 49 81 IPR002110 GO:0005515
Vifa6g01794 417 Gene3D Transferase(Phosphotransferase) domain 1 221 413 - -
Vifa6g01794 417 Pfam Protein tyrosine and serine/threonine kinase 144 399 IPR001245 GO:0004672|GO:0006468
Vifa6g01794 417 SUPERFAMILY Protein kinase-like (PK-like) 140 412 IPR011009 -
Vifa6g01794 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Vifa6g01794 417 SMART serkin_6 141 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01794 Vifa-Chr6 683092238 683097969 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01794 2 417 MAP Kinase Kinase Kinase AT1G14000 82.933 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vifa6g01794 PK_Tyr_Ser-Thr 1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01794 - - gmx:100793237 780.015