Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01791 ATGGCTACTATCTTTTCTGGAGGTTCAGTTTCTCCCTTTCCTTTTCACACCAACAAGGGTACATCTTTTACACCCAAAGGTCCACCAAGTCTTCATCTCAAGAAATTCTTCTCTGCAAAATCAGTAGCCTCTGTTGGAACCGAACCATCACTGTCTCCAGCACTTCAAACCTTCTGGAAGTGGCTACAGGAAGAAGGTGTCATCACTGCCAAGACCCCAGTGAAAGCTGGTGTGGTCACAGAAGGTCTAGGATTGGTTGCTGTCAAAGACATTTCTAGGAATGATGTTATTTTGCAGGTGCCAAAAAGGCTGTGGATAAATCCAGATGCAGTTGCAGCTTCTGAGATTGGAAAAGTGTGCAGTGAGTTGAAGCCATGGTTGTCTGTTATACTCTTTCTCATAAGAGAAAGGTCAAGGGAAGATTCTGTTTGGAAACACTATTTTGGTATTCTGCCACAGGAAACTGATTCTACTATATATTGGTCAGAGGAAGAGCTCCAAGAACTTCAAGGTAGTCAACTTTTGAAAACAACCGTGTCTGTGAAAGAATATGTGAAGAATGAATGTCTGAAACTAGAACAAGAAATCATTCTCCCTAATAAGCGGCTTTTTCCGACTCCTGTGACGCTGGATGACTTCTTTTGGGCATTTGGAATTCTCAGATCAAGGGCGTTTTCTCGTCTTCGCAATGAAAATCTAGTTATAGTTCCAATGGCAGACTTGATTAACCACAGTTCTAGAGTAACTACAGAGGAACAAGCTTATGAAGTTAAAGGTGCAGCTGGCCTTTTCTCTCGGGATTACCTATTTTCTCTAAGGAGCCCTCTTTCTGTCAAGGCTGGAGAACAGGTATATATCCAATATGATTTGAACAAAAGCAATGCAGAGTTGGCTCTAGACTACGGTTTCATTGAACCAGATGAAAATCGAAATGCATACACTCTGACACTGGAGATATCTGAGTCAGACCCTTTTTTTGATGACAAACTAGACATTGCTGAGTCTAATGGTTTTGCTCAGACAGCATACTTTGACATGTTCTATAATCGCACTCTTCCACCTGGATTGCTTCCGTATTTGAGACTAGTAGCGCTGGGGGGTACCGACGCTTTCTTATTGGAATCACTGTTTAGAGACTCCATATGGGGTCATCTTGAGTTGTTCGTCAGCCGTGACAATGAGGAGCTACTATGCAGAGCAGTTCGAGATGCCTGCAAATCTGCCCTTGCTGGTTATCATACAACCATTGAACAGGATTGCGAGATGAAAAAAGAAAATCTAGATTCAAGGCTTGCAATAGCAGTTGGAATAAGAGAAGGAGAAAAGATGGTCCTGCAGCAAATAGACGGCATCTTCAAGCAGAAAGAACAGGAATTGGACCAGTTAGAGTATTATCAAGAAAGGAGGCTTAAGGACCTTGGGCTTTGCGGAGAAAATGGCGATATCCTTGGAGACCTTGGAAAATTCTTCTAA 1473 0.4243 MATIFSGGSVSPFPFHTNKGTSFTPKGPPSLHLKKFFSAKSVASVGTEPSLSPALQTFWKWLQEEGVITAKTPVKAGVVTEGLGLVAVKDISRNDVILQVPKRLWINPDAVAASEIGKVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPTPVTLDDFFWAFGILRSRAFSRLRNENLVIVPMADLINHSSRVTTEEQAYEVKGAAGLFSRDYLFSLRSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPDENRNAYTLTLEISESDPFFDDKLDIAESNGFAQTAYFDMFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDSIWGHLELFVSRDNEELLCRAVRDACKSALAGYHTTIEQDCEMKKENLDSRLAIAVGIREGEKMVLQQIDGIFKQKEQELDQLEYYQERRLKDLGLCGENGDILGDLGKFF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01791 490 Gene3D - 305 469 IPR036464 -
Vifa6g01791 490 SUPERFAMILY SET domain 52 310 IPR046341 -
Vifa6g01791 490 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 51 303 - -
Vifa6g01791 490 Pfam SET domain 82 288 IPR001214 GO:0005515
Vifa6g01791 490 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 305 469 - -
Vifa6g01791 490 PIRSF RMT_SET 1 489 IPR011192 GO:0009507|GO:0030785
Vifa6g01791 490 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 3 488 IPR011192 GO:0009507|GO:0030785
Vifa6g01791 490 ProSiteProfiles SET domain profile. 65 289 IPR001214 GO:0005515
Vifa6g01791 490 SMART set_7 72 295 IPR001214 GO:0005515
Vifa6g01791 490 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 312 483 IPR036464 -
Vifa6g01791 490 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 53 424 - -
Vifa6g01791 490 Pfam Rubisco LSMT substrate-binding 321 445 IPR015353 -
Vifa6g01791 490 Gene3D set domain protein methyltransferase, domain 1 51 304 - -
Vifa6g01791 490 CDD SET_RBCMT 71 304 IPR044431 GO:0016279|GO:0018022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01791 Vifa-Chr6 682899463 682901480 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01791 52 246 NAC Transcription Factor Family AT3G56570 29.902 3.48e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa6g01791 SET 3.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01791 K00592 - ag:AAA69903 899.427