Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01789 ATGGGTAGGTCACCTTGCTGTGAGAAAGTTGGTTTGAAGAAAGGTCCATGGACTCCTGAAGAAGACCAAAAACTCATTGCTTACATTGAAGAATTTGGTCATGGAAGCTGGCGTGCATTGCCTTCAAAAGCTGGACTTCAAAGATGTGGTAAGAGCTGCAGACTAAGGTGGACTAACTACCTCCGACCAGACATCAAAAGAGGAAAGTTCAGTTTACAGGAAGAGCAAACCATTATTCAACTTCATGCTCTTCTCGGAAACCGATGGTCAGCCATAGCAGCTCAACTTCCAAGGAGAACAGACAACGAGATAAAAAACTACTGGAACACACATCTCAAGAAAAGGCTAACAAGAATGGGAATAGACCCGACAACTCACAAACCAAAAACCGATACCACATCTGGTGGAAGCAGCAACTGTCAGTACTCCAAGGACTCCGCAAATCTCAGCCACATGGCTCAATGGGAAAGTGCTCGTTTAGAAGCTGAAGCGAGACTCGTTAGAGAAACCAACAAAATGAAAGTTCAAAGACAACTCGAGTTTGAATCCTCCAAACCTCAAACACCTGCAAGACTTTTTCTCAACAAAATCACACCGCTTGTTCAGCCTTCACTTCCACCTTGCCTTGATATTCTCAAAGCATGGCAGAGTTCTTGGTCCAAACCTACACAGAGCAACGAAACCTTAAACAGCAACAACAGTAGCAGAATGCATAGTATGTATGCTATGATGTTGTCTAATGATGAAAATCTTGAATCTCCAACATCTACTTTGAACTTCCCTGGAACAACTCTGCTTCCTCTGCCTCCTCTTCCTGTTCCTGTTTCCATTCCTATGACCAACAACAACAACAACAACAACATTGTACCATTTAATCAAGTTCCACTTCCTTTAACCGACAACACTAACAATGACGATGAGATATGGAAACAATTCAACTTAACAAAACAGAACACAGAAGGTGATCATGAAGACGATGATATAATGGCGGCGGTTGAAGCATTTAGATCATCCTGTGGTGGATTTGACAATAACATCCCTCCAATTTCATCCAATGTTCTTCAAGCTCTCGAGGATGGAAACGGTGGTGATCATGAAAACTTGAATGAAAGTAGCAGCTTGATGTGTAACGTGAATCTGGAAGAGAATAAGCATTATTGGAATAGCATACTTGGTTTGGTCAATGAATCTGATGATATGAACATTGTCCTTGGATGA 1218 0.4187 MGRSPCCEKVGLKKGPWTPEEDQKLIAYIEEFGHGSWRALPSKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPRRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTDTTSGGSSNCQYSKDSANLSHMAQWESARLEAEARLVRETNKMKVQRQLEFESSKPQTPARLFLNKITPLVQPSLPPCLDILKAWQSSWSKPTQSNETLNSNNSSRMHSMYAMMLSNDENLESPTSTLNFPGTTLLPLPPLPVPVSIPMTNNNNNNNIVPFNQVPLPLTDNTNNDDEIWKQFNLTKQNTEGDHEDDDIMAAVEAFRSSCGGFDNNIPPISSNVLQALEDGNGGDHENLNESSSLMCNVNLEENKHYWNSILGLVNESDDMNIVLG 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01789 405 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vifa6g01789 405 CDD SANT 69 112 IPR001005 -
Vifa6g01789 405 FunFam MYB transcription factor 68 129 - -
Vifa6g01789 405 CDD SANT 16 61 IPR001005 -
Vifa6g01789 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vifa6g01789 405 MobiDBLite consensus disorder prediction 126 143 - -
Vifa6g01789 405 Coils Coil 152 172 - -
Vifa6g01789 405 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa6g01789 405 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 281 - -
Vifa6g01789 405 MobiDBLite consensus disorder prediction 118 143 - -
Vifa6g01789 405 Gene3D - 68 139 - -
Vifa6g01789 405 FunFam MYB-related transcription factor 13 66 - -
Vifa6g01789 405 Gene3D - 11 67 - -
Vifa6g01789 405 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa6g01789 405 SMART sant 13 63 IPR001005 -
Vifa6g01789 405 SMART sant 66 114 IPR001005 -
Vifa6g01789 405 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa6g01789 405 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vifa6g01789 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01789 Vifa-Chr6 681923183 681924607 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01789 1 397 MYB Transcription Factor Family AT3G01140 47.420 6.37e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa6g01789 Myb_DNA-binding 9.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01789 K09422 - gmx:100799222 452.595