Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01787 ATGGCAACAACACCCGAAGAAGAGCACATGCAAAACCTCCGATCCAGAGCAACAGAGCTTTTCATCAGAGAAGAATGGAACCCTTCAATCGAAGCTTATTCCCAATTCATCACCCTCTGCACCCACCATCTCTCTCTTCCTCAATCTCACTTCACTTCACTCAAGCTTCGCAAATCACTCTGCATAGCCTTATGCAACCGCGCAGAAGCGAAGTCAAGATTGCGCGAACTCAACTCCGCATTGGATGATTGTGATTACGCTTTGCAAGTTGATGGTTCCCATTTCAAAACCCTTGTTTGTAAAGGTAAGATTTTGCTTTCGCTTAATAGATATTCTATGGCTCTTCATTGCTTTAAAATGGCCCATCTTGATCCTCAGGCGAATGGGAATGTTGATTATCTTGGGTTTTGGCAAAAATGTAGAAAGTTTGAATTTTTATCAAGGACTGGGTTTCTTGATCTTTCGGATTGGGTTTCGAATGGGTTTCCGGGTAAGGCTCCCGAGCTTGCTGAGTATATTGGGGCTATTCAGATTAGGAAATCTGAAATTAGTGGGCGGGGGATTTTCGTTACTAAGGATATTGATGCAGGGTCTTTGATCTTGATTACGAAGGCAATTGCGATGGAGAGGAGTATGTTGACAGGTAAAGATTTGAGTGAAGATATACAGTTAGTTATGTGGAAGAATTTCGTTGATAAAGTTGTAGAATTGGTTAGGAAATGTCATAAAACTAGGGATTTGATTGAGAAGTTGTCGATAGGGGGAAATGAGGATGAACTTGATGTGCCTGATGTAGATCTCTTTAGGCCTGAGAGTATTGGTGAAATGAATTCGCGCGAAGAAATTGATATGGTTAAGTTATTGGCTATATTGGATGTTAATTCTCTTACTGAGGAGGCGGTTTCTGCCAATGTTTTGAGGAAGAACAATGATTGTTATGGTGTTGGGCTATGGTTGCTTCCTTCATTCATCAATCACTCGTGCTCTCCTAATGTGAGGCGTTTGCATGTCGGGGATTATTTAATTGTTCATGCTTCGAGAGATTTGAAAGCGGATGAAGAGCTAACTATTGCTTATTATGATCCGCTTTCTCCGTTGAACAAGAGAAGAGATATGTCTGTGACATGGGGGATTCAATGCAGGTGTAAGAGGTGTAAGTTTGAGGTGGATGTCTTGTACCACAAGAAAGAGTTGAAGGAGATTGAGATTGGTATTGAAAAAGGGATGGATGTTGGTAGTTTGGTGTATAAGCTCGAGGAACAAATGAAGAGATGGAAGTTAAGAGGGAAAGAGAGGGGATACATGAGGGCTTCATTTTGGTCGTTGTATTCGGAGGCTTATGGTTCGGAGAAGTGTATGAAAAAATGGGGAAGGAGGATTCCAATATTGGAGGCAGTGGTTGATAGCATCACAGATGCAGTGGGAAGTGATCACAGGGTGCTTAAGATTCTGAATGAGGAGTTGAAGAAAAAAGGTAGTGCTAGTAGTGGTGATGGAAATTTGGAGATGGAGAAAGTTTTCAGGTTAGGAAGAGAAGTATATGGCAAGGTAATGAAAAAGCATGCAATGAGGAAATTGCTTGAGCTTTGCAATGCTGATTGA 1602 0.4151 MATTPEEEHMQNLRSRATELFIREEWNPSIEAYSQFITLCTHHLSLPQSHFTSLKLRKSLCIALCNRAEAKSRLRELNSALDDCDYALQVDGSHFKTLVCKGKILLSLNRYSMALHCFKMAHLDPQANGNVDYLGFWQKCRKFEFLSRTGFLDLSDWVSNGFPGKAPELAEYIGAIQIRKSEISGRGIFVTKDIDAGSLILITKAIAMERSMLTGKDLSEDIQLVMWKNFVDKVVELVRKCHKTRDLIEKLSIGGNEDELDVPDVDLFRPESIGEMNSREEIDMVKLLAILDVNSLTEEAVSANVLRKNNDCYGVGLWLLPSFINHSCSPNVRRLHVGDYLIVHASRDLKADEELTIAYYDPLSPLNKRRDMSVTWGIQCRCKRCKFEVDVLYHKKELKEIEIGIEKGMDVGSLVYKLEEQMKRWKLRGKERGYMRASFWSLYSEAYGSEKCMKKWGRRIPILEAVVDSITDAVGSDHRVLKILNEELKKKGSASSGDGNLEMEKVFRLGREVYGKVMKKHAMRKLLELCNAD 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01787 533 SMART set_7 174 366 IPR001214 GO:0005515
Vifa6g01787 533 Gene3D Tetratricopeptide repeat domain 1 139 IPR011990 GO:0005515
Vifa6g01787 533 ProSiteProfiles SET domain profile. 174 360 IPR001214 GO:0005515
Vifa6g01787 533 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 6 529 - -
Vifa6g01787 533 Pfam SET domain 185 359 IPR001214 GO:0005515
Vifa6g01787 533 Gene3D SET domain 274 389 IPR046341 -
Vifa6g01787 533 SUPERFAMILY TPR-like 9 122 IPR011990 GO:0005515
Vifa6g01787 533 SUPERFAMILY SET domain 175 386 IPR046341 -
Vifa6g01787 533 CDD SET_SMYD 288 385 - -
Vifa6g01787 533 SMART tpr_5 95 127 IPR019734 GO:0005515
Vifa6g01787 533 SMART tpr_5 61 94 IPR019734 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa6g01787 SET 2.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01787 - - mtr:11446296 845.499