Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01774 ATGGATGAAAACCAAGTTAACTCTTGTGGACTAAATTATTCCATATTTCATGATTTAGAGGTTCTTAAAGAGGCTTTTGAGGTCTTTTGCAACAAAGGTGTTGCTGGAAACTCTAGTGCAGAACTTCTTGCCACTTATTGTGATAACATTCTCAAGAAAGGAGGAAGTAAAAAATTGAGTGATGAAGCAATTGAAGAAACTCTTGAAAAGGTGGTAAAGTTGCTCGCCTATATTAGTGACAAAGACTTGTTTGCTGAGTTTTACAGGAAAAAGCTTGCTCGAAGGCTTCTTTTTTACAAGAGTGCCGATGATGATCATGAGAGAAGTATTTTGACCAAATTGAAGCAACAATGTGGAGGACAGTTTACCTCGAAGATGGAAGGAATGGTTACAGATTTGACGCTGGAAAAGGAGAATCAAACTAGCTTTGAGGAGTATTTAAACAAAAATCCTAATGCAGACCCTGGAATAGACTTGACAGTTACAGTTCTAACTACTGGCTTCTGGCCTAGTTATAAATCTTTTGATCTCAATCTTCCTGTAGAAATGATCATGGTTAGTCAAGCTGATGATGTTGCTGGAATCATATCTTCTAAAGCTGGCCTGCAGTATGTTGGACCTGACTTGGATGCAACGAAAGTTGTTGCAGATGCTCATTCCAAAAGATCCCTGAAATTATTTGAAATTGCTTTACGAGACTTCAAGGCGCAGTTGGAGGAAGATCCAATTGTTCATAGGCACTTGTCATCGTTGTATGACACCCTTTTGGAGCAGAATCTTTGCAGGTTGATTGAACCATTTTCAAGGGTTGAGATTGCACATATTGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATTAGTGGTTTTATCTTCCCACCTTGCTGTATCTTCTATCGGATCTGTTCCCGTGCCTGTTGAAGTTGCCGAATCCTTACCTGTTAAAATATACACAAAGTCACACAAACATCAAGAAGAACTCAACAGGCAATTTAGAACTAGTGGTAGTTACCCTGAAAACACCAACTCCCATATTCGTCTCAATAAGGGTACTTTGTTGAATTCGTTGTGGAAATTAAATGTAGTGGACATAGAAGTAACCCTTGCATACGTGTGTTAA 1128 0.3883 MDENQVNSCGLNYSIFHDLEVLKEAFEVFCNKGVAGNSSAELLATYCDNILKKGGSKKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFYKSADDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLEKENQTSFEEYLNKNPNADPGIDLTVTVLTTGFWPSYKSFDLNLPVEMIMVSQADDVAGIISSKAGLQYVGPDLDATKVVADAHSKRSLKLFEIALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAEALFEVLDEIHQQLVVLSSHLAVSSIGSVPVPVEVAESLPVKIYTKSHKHQEELNRQFRTSGSYPENTNSHIRLNKGTLLNSLWKLNVVDIEVTLAYVC 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01774 375 PANTHER CULLIN 6 184 IPR045093 -
Vifa6g01774 375 SUPERFAMILY Cullin homology domain 37 185 IPR036317 -
Vifa6g01774 375 Gene3D Cullin Repeats 38 152 - -
Vifa6g01774 375 SMART cul_2 69 200 IPR016158 -
Vifa6g01774 375 Pfam PCI domain 215 286 IPR000717 -
Vifa6g01774 375 ProSiteProfiles Cullin family profile. 38 183 IPR016158 -
Vifa6g01774 375 Pfam Cullin family 20 183 IPR001373 GO:0006511|GO:0031625
Vifa6g01774 375 Gene3D - 179 294 - -
Vifa6g01774 375 FunFam Cullin-1 like 39 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01774 Vifa-Chr6 675592005 675593528 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01774 265 323 C3H Transcription Factor Family AT5G45290 63.492 1.13e-13 70.5