Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01770 ATGGCTAGCAGTAGCAGAAACTCCTCCATTTCAGCTCTCAAAAATTATAACTATGATGTGTTTGTGAGCTTCCGAGGTGAAGACACTCGCTACAATTTCACTGATTTTCTTTTCGACGCCTTTCAAACAAAAGCCATTTTTGCATTTAGAGATGACAATAATCTTCCAAAAGGTGAATCCATAGCACCCAAGCTCCTTCGTGCAATCCAACACTCTCAAATCTATGTTGTTGTCTTCTCAAAGAACTATGCTTCCTCACCTTGGTGCTTGCAAGAACTGGAAAAGATATGTGAATGCTATCAAGTGCCCGGAAAACATGTTCTTCCCGTTTTCTATGATGTTGATCCTTCTGACGTCAGACATCAAAAAGGAATTTATGCTGAAGCCTTTGCCAAATATGAAAACAGATTCCAGTATGACTCTCAGATGGTGCTAAGATGGAGGAAAGCTCTAACAAAGGTTGCAAATCTCTCTGGATGGGATCTACGTGATAAGCCACAATCTGCAGAGATTAAAAAGATGGTTCAAAAGATAATAAGTATATTGGATTGCATATCTTCATCTGTTTCAAAAGATTTAGTTGAAATTTGCGGGACGGGAGGAATAGGGAAGACAACTCTTGCTACTGTTTTATATGATCGAATCTCTCAACAATTTGGAACATGTTGTTTTATTGATGATGTCAGTAAAATTTATAGACTACATGGTCCACTCGGTGTACAAAAGCAAATTCTAGATCAAACTGTCGGTCAAGAGCACCATCAGGTATGCAATCATTACAACGCAGCTAATCTGATACGACGTAGGCTCTGTCGTCAAAAGGCCCTTATGATTTTTGATAATGTTGATCACATTAAACAACTGGAAAAAAGTGTTGTGCATCGTGAATGGTTAAGTGCCGGTAGTAGAATCATTATCATTTCTAGAGATGAGCATATATTGAAACAGTATGGGGTGGATGCAGTTTACAAAGTTCCTCTCTTGGATTGGGCCAACTCTCTTCAATTATTGTGTCGAAAAGCTTTCAAACTCGATCACATTTTAAGTAGTAGTTATGGAGGGTTGGTTAATGGTATACTAAATCATGCCAATGGCCTGCCACTAGCAATTAAAGTATTGGGTTCATTTTTGTTTGGCCGAGATATATCCGAATGGAAAAGTGCATTGGCTAATTTGAGAGGAAATCCGGGCAAAGATGTCATGGATGTGCTCCGATTAAGTTTTGATGGGCTAAGGGAGACAGAAAAAGAAATATTTCTTCATATTTGTTTTTTCGACATGCATATGGAGAAATATGTTAAAAATGTGTTAAATTGTTGTGGATTTCATGTTGATATTGGATTAAGGGTTCTCATTGATAAGTCACTCGTAAGCATTGAAGGTGAAAAGATTGTAATGCACGGTTTGTTGGAAGAGCTAGGCAGCAAAATTGTTGCAGAAAACACAAGCAAAGAGCCCACAAAATGGTTCGACAAACAACGCTACGATGTTAGGTTGGAAAATATGGAAAAGAATGTTGAAGTAGTGCTGCAGCCTCAAATAATGACAGTGATTCTGAAAGTTTACATGCATTGTGAAGGTTGTTCACAAGATATCAAAAGACGCATTGAGAGAATCAAAGGAGTGGTATCAGCAGAACCGGATCAGAAGAACTCACTAGTGACAGTGAAAGGAGTATTTGAAAAGGAGAAATTAGTTAAATATGTTTACAAGAGAACCGGAAAACAAGCGGTGATAGTGAAACAAGAGCCGGAGAAGAAAGAAGAAGCAAAACAAGCGGTGATAGTGAAACAAGAGCCGGAGAAGAAAGAAGAAGGAAAACAAGCGATGATAGTGAAACAAGAGCCGGAGAAGAAAGAAGAAGCAAAAGAAACTAAGGAAGAAGAGAAGAAAACTGAGGAGAAGGACGAGAATGAGAAAGGAAGTGGTGAAGGAGAGGAAAAGAAAGAAGCTGCACCGGGAGATGAAAAACTAGGTGGTGGCGGAGGCGGTGGTGATGGAGGTGGTGTTGGAGGTGGTGGTGATGGAGGTGGTGATGAAGGTGGTGGTGGTGCAGAAGAAACCACGGTTGTTGAAGTGAAGAAAAATGAATATAATAGTAATCCACATGGTATGGAGTTTAATGCTTTTCATGGACCAGCTTACCCTCTACAGATTTTCAGTGACGAGAACCCCAATGCTTGTTCTATAATGTAA 2196 0.3944 MASSSRNSSISALKNYNYDVFVSFRGEDTRYNFTDFLFDAFQTKAIFAFRDDNNLPKGESIAPKLLRAIQHSQIYVVVFSKNYASSPWCLQELEKICECYQVPGKHVLPVFYDVDPSDVRHQKGIYAEAFAKYENRFQYDSQMVLRWRKALTKVANLSGWDLRDKPQSAEIKKMVQKIISILDCISSSVSKDLVEICGTGGIGKTTLATVLYDRISQQFGTCCFIDDVSKIYRLHGPLGVQKQILDQTVGQEHHQVCNHYNAANLIRRRLCRQKALMIFDNVDHIKQLEKSVVHREWLSAGSRIIIISRDEHILKQYGVDAVYKVPLLDWANSLQLLCRKAFKLDHILSSSYGGLVNGILNHANGLPLAIKVLGSFLFGRDISEWKSALANLRGNPGKDVMDVLRLSFDGLRETEKEIFLHICFFDMHMEKYVKNVLNCCGFHVDIGLRVLIDKSLVSIEGEKIVMHGLLEELGSKIVAENTSKEPTKWFDKQRYDVRLENMEKNVEVVLQPQIMTVILKVYMHCEGCSQDIKRRIERIKGVVSAEPDQKNSLVTVKGVFEKEKLVKYVYKRTGKQAVIVKQEPEKKEEAKQAVIVKQEPEKKEEGKQAMIVKQEPEKKEEAKETKEEEKKTEEKDENEKGSGEGEEKKEAAPGDEKLGGGGGGGDGGGVGGGGDGGGDEGGGGAEETTVVEVKKNEYNSNPHGMEFNAFHGPAYPLQIFSDENPNACSIM 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01770 731 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 184 - -
Vifa6g01770 731 Pfam TIR domain 17 179 IPR000157 GO:0007165
Vifa6g01770 731 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 509 IPR044974 GO:0006952
Vifa6g01770 731 CDD HMA 523 577 IPR006121 GO:0046872
Vifa6g01770 731 Gene3D - 328 412 IPR042197 -
Vifa6g01770 731 Pfam NB-ARC domain 172 394 IPR002182 GO:0043531
Vifa6g01770 731 MobiDBLite consensus disorder prediction 599 689 - -
Vifa6g01770 731 Coils Coil 615 639 - -
Vifa6g01770 731 Gene3D - 512 580 - -
Vifa6g01770 731 SUPERFAMILY "Winged helix" DNA-binding domain 399 482 IPR036390 -
Vifa6g01770 731 SMART till_3 17 157 IPR000157 GO:0007165
Vifa6g01770 731 MobiDBLite consensus disorder prediction 599 655 - -
Vifa6g01770 731 Gene3D - 1 154 IPR035897 -
Vifa6g01770 731 PRINTS Disease resistance protein signature 193 208 - -
Vifa6g01770 731 PRINTS Disease resistance protein signature 269 283 - -
Vifa6g01770 731 PRINTS Disease resistance protein signature 363 377 - -
Vifa6g01770 731 SUPERFAMILY HMA, heavy metal-associated domain 509 583 IPR036163 GO:0046872
Vifa6g01770 731 Gene3D - 155 321 IPR027417 -
Vifa6g01770 731 ProSiteProfiles TIR domain profile. 16 182 IPR000157 GO:0007165
Vifa6g01770 731 Pfam Heavy-metal-associated domain 522 573 IPR006121 GO:0046872
Vifa6g01770 731 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 160 IPR035897 -
Vifa6g01770 731 ProSiteProfiles Heavy-metal-associated domain profile. 514 578 IPR006121 GO:0046872
Vifa6g01770 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 422 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01770 Vifa-Chr6 674116278 674118892 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01770 17 486 WRKY Transcription Factor Family AT4G12020 25.806 1.32e-37 149