Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01764 ATGGTTTCCCGGGAAAACAACAATTGGCTCTACGATTACGGCTTAATCGACGATATTTCCCCTCCCATTCCCACCTTCATGCCCGCCCCTTCCCCCGGCTTCACCTGGCCCGCTCACCAGCCCTTCAATCTTTCTTCCAATGTCGGTGCTGAAATTGACGTCTCATTAGGGGATTCTGACAGTCTCAAAGAGTCTGGTTCAAAGAAGAGGGGTAGATCTGAGTCATGTGCTGCCACTAGCTCCAAGGCATGTCGGGAGAAGTTGCGTAGAGATAGGCTTAATGACAAGTTTATTGAATTGGGCTCCATTTTGGAGCCTGGAAGGCCTGCCAAAACAGACAAGGCTGCTATCCTGATTGATGCTGTCCGAATGGTGACACAGCTGAAGGGTGAAGCCGAAAAGTTGAAAGATGCTAATTCGGGTCTTCAAGAAAAGATTAAAGAATTGAAGGTTGAGAAGAATGAACTCCGTGACGAGAAACAGAGGCTCAAGGCAGAGAAAGAGAAGTTGGAGCAGCAGCTGAAATCTATGAATACACAACCCAGTTTCTTGCCTCCTCCCCCCACTGCCCTTCCTGCTGCACTCCCTGCTGCATTTGCTGCACAAGGCCAAGCCCATGGCAACAAGTTGGTACCTTTTATTAGTTATCCAGGAGTTGCAATGTGGCAATTTATGCCACCTGCTGCAGTGGATACCTCACAGGATCATGTACTTCGTCCTCCAGTTGCCTAA 732 0.4891 MVSRENNNWLYDYGLIDDISPPIPTFMPAPSPGFTWPAHQPFNLSSNVGAEIDVSLGDSDSLKESGSKKRGRSESCAATSSKACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAILIDAVRMVTQLKGEAEKLKDANSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQLKSMNTQPSFLPPPPTALPAALPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01764 243 FunFam Transcription factor bHLH34 68 126 - -
Vifa6g01764 243 Gene3D - 80 156 IPR036638 GO:0046983
Vifa6g01764 243 Pfam Helix-loop-helix DNA-binding domain 81 128 IPR011598 GO:0046983
Vifa6g01764 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 143 IPR036638 GO:0046983
Vifa6g01764 243 CDD bHLH_AtILR3_like 82 157 - -
Vifa6g01764 243 Coils Coil 125 180 - -
Vifa6g01764 243 MobiDBLite consensus disorder prediction 58 79 - -
Vifa6g01764 243 SMART finulus 83 134 IPR011598 GO:0046983
Vifa6g01764 243 PANTHER BHLH TRANSCRIPTION FACTOR 4 243 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Vifa6g01764 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 128 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01764 Vifa-Chr6 673115341 673117941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01764 1 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 71.020 1.51e-116 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa6g01764 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01764 - - psat:127100684 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01764 6 673115341 673117941 Vifa6g01764 6 673115341 673117941 ECH
Vifa1g02646 1 416609082 416611157 Vifa6g01764 6 673115341 673117941 PCT