Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01749 ATGCCAACAGTGTGGTTTTCTTTGAAGAAGTCACTACATTGCAAATCAGAACCATCAGATGTACATGATCCAAAAACAAGGAAGCATTTAAGCACAATCTTGACAAAAAAAGGAGGAAGATCAGGTTGTTCAAGGTCAATAGCAAATCTAAAAGATGTTATCCATGGAAGCAAACGCCATCTTGAAAAGCCTCCAAGTTGTAGTCCAAGATCTATTGGAAGCAGTGAGTTTCTCAACCCAATAACTCATGAGGTTATTTTGAGTAACTCAAGGTGTGAGCTTAAAATCACTGGTTTTCAAGAAGGGGTTAATAGTGGTGGAAACAATGCTAGTGGAAGTAGTGCTGGTGGTTCTTCAACTTTTGTTGGTACTTTGAGACCTGGAACACCTGGTCCTGGAGGGCACCCTACAATGCATTACTTTAACCCTTCTTTTAGGACTTCTTCTACTCCTCCAAGGAAATCTCCCTTTCTGTTATCAGAAGGGTCTGGTCTTAATGGTGCTGGTGTTCATTCAAGTAATAGGATGTCACTTGAGACTGATGCTAATGGCTCTTCAACTGTTACTTGTCACAAATGTGGTGAACAGTTTACCAAATGGGAAGCTGCTGAAACTCACCATCTCTCCAAGCATGCTGTTACTGAACTTGTGGAAGGAGATTCATCAAGGAAAATAGTAGAGATAATATGCAGAACAAGTTGGTTAAAGTCTGAAAACCACTGTGGTAGAATTGAGAGAGTTTTGAAGGTGCACAACATGCAAAAGACATTAGCTAGATTCGAAGAATACAGAGAAATGGTGAAAATCAAAGCAAGTAAACTCCAGAAGAAGCATCCTAGGTGTTTAGCTGACGGAAACGAGCTTTTACGGTTCTATGGAACCAGTGTTGCTTGTTCTCTTGGTCTCAATGGTTCATCAAGTCTTTGCCTATCAGAAAAATGCTGTGTTTGCAGAATTATCAGGAATGGTTTTTCTGCTAAGAAGGAGCTGAAAGGTGGTATAGGTGTTTTCACAACTTCCACAAGTGGAAGAGCTTTTGAGTCTATAGAGATTCTTGATAATGAACCGTCACAAAGAAAGGCGTTGATAGTGTGCAGAGTAATCGCTGGCAGGGTTCATCGGCCACTCGAGAACATTCAGGAAATGGCAGCTCAAACTGGATTTGATTCATTGGCTGGAAAAGTCGGTCTTTACTCAAATATCGAAGAGCTCTATTTGCTTAATCCTAGAGCTCTTCTTCCTTGTTTTGTTGTAATTTGCAAACCATGA 1269 0.405 MPTVWFSLKKSLHCKSEPSDVHDPKTRKHLSTILTKKGGRSGCSRSIANLKDVIHGSKRHLEKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGFQEGVNSGGNNASGSSAGGSSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLLSEGSGLNGAGVHSSNRMSLETDANGSSTVTCHKCGEQFTKWEAAETHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENHCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLQKKHPRCLADGNELLRFYGTSVACSLGLNGSSSLCLSEKCCVCRIIRNGFSAKKELKGGIGVFTTSTSGRAFESIEILDNEPSQRKALIVCRVIAGRVHRPLENIQEMAAQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01749 422 Gene3D - 203 421 - -
Vifa6g01749 422 SUPERFAMILY ADP-ribosylation 213 421 - -
Vifa6g01749 422 MobiDBLite consensus disorder prediction 105 125 - -
Vifa6g01749 422 ProSitePatterns Zinc finger C2H2 type domain signature. 190 211 IPR013087 -
Vifa6g01749 422 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 420 - -
Vifa6g01749 422 MobiDBLite consensus disorder prediction 105 154 - -
Vifa6g01749 422 FunFam C2H2-like zinc finger protein 212 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01749 Vifa-Chr6 654292951 654294828 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01749 1 422 C2H2 Transcription Factor Family AT5G54630 69.114 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa6g01749 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01749 - - gmx:100787790 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01749 6 654292951 654294828 Vifa6g01749 6 654292951 654294828 ECH