Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01742 ATGCTACTATCTAATCGGCACTTGGAATTTTATAAAAGTGCACTTCCTCAACCTTTGACTTCGATTCAGCGTCTTTATATTAGTCGGCTAGTTGAGAAATATGGAGCTGATTTTCAGAGAATGATGATGGATATAAAGCTAAATCCTATGCAGCATTCTGTTGCAACTTTAGAGAAATTGTATTTTGGTTGTTTTGACACTTTGGATGTTGCTCGGAAGTATAAGTTGGCCAAGGAAAACATCAAAGAGATTCCATCTTTTCAAAGTAGAAAACTTCTTTTGGCATGCTCACTTAACTTGATGGCCTGCTACTTGAAGACAAGGCAGTATGATGAATGCATAAAAGAAGGTTCTGAGGTTTTGGCGTATGACGCAAAGAACCTTAAGGCTCTTTATCGAAGAGGCCAGGCATATAAGGAACGAGGCCTGCTACAGGATGCCGTCACTGATTTGAGCAATGCACTTGAAGTGTCTCCTGATGATGATATAATTGGAGAGCTTTTACGGGACACCAAGGAACAGTTGATAAAGGAAGGTGGTCATTGTGCTCCTGGAAGTATATTGTTTGTTTTAGCGGAAGTTGTCAAACAACATCTATGTCGATCGTTTCCAGATCGACATCTTCTTCTGCAGAAAGCAATCATATTCTTAACGCAAAGGGACAAGGCGAGGACAAAGGAAATTGAACTCTTAATGCAAATGCAGAATTTTAGTGGAAGACAGGGATTGGAATCACCCGCTGATGGTAGACGTTCATCTGAGTCTAGCTACCGTATTGGAGATAATAGAACTTCAGGGGGGACAAATTAG 810 0.4049 MLLSNRHLEFYKSALPQPLTSIQRLYISRLVEKYGADFQRMMMDIKLNPMQHSVATLEKLYFGCFDTLDVARKYKLAKENIKEIPSFQSRKLLLACSLNLMACYLKTRQYDECIKEGSEVLAYDAKNLKALYRRGQAYKERGLLQDAVTDLSNALEVSPDDDIIGELLRDTKEQLIKEGGHCAPGSILFVLAEVVKQHLCRSFPDRHLLLQKAIIFLTQRDKARTKEIELLMQMQNFSGRQGLESPADGRRSSESSYRIGDNRTSGGTN 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01742 269 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 69 217 IPR039663 -
Vifa6g01742 269 Pfam Ribosome biogenesis protein Nop16 13 60 IPR019002 -
Vifa6g01742 269 SUPERFAMILY TPR-like 88 168 IPR011990 GO:0005515
Vifa6g01742 269 ProSiteProfiles TPR repeat profile. 128 161 IPR019734 GO:0005515
Vifa6g01742 269 SMART tpr_5 94 127 IPR019734 GO:0005515
Vifa6g01742 269 SMART tpr_5 128 161 IPR019734 GO:0005515
Vifa6g01742 269 Gene3D Tetratricopeptide repeat domain 58 179 IPR011990 GO:0005515
Vifa6g01742 269 MobiDBLite consensus disorder prediction 239 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01742 Vifa-Chr6 651342153 651346427 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01742 88 161 Calmodulin-binding Proteins AT5G48570 44.595 6.15e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01742 - - lja:Lj3g3v2923190.2 194.897