Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01741 ATGCTACTATCTAATCGGCACTTGGAATTTTATAAAAGTGCACTTCCTCAACCTTTGACTTCGATTCAGCGTCTTTATATTAGTCGGCTAGTTGAGAAATATGGAGCTGATTTTCAGAGAATGATGATGGATATAAAGCTAAATCCTATGCAGCATTCTGTTGCAACTTTAGAGAAATTGTATTTTGGTTGTTTTGACACTTTGGATGTTGCTCGGAAGTATAAGTTGGCCAAGGAAAACATCAAAGAGATTCCATCTTTTCAAAGTAGAAAACTTCTTTTGGCATGCTCACTTAACTTGATGGCCTGCTACTTGAAGACAAGGCAGTATGATGAATGCATAAAAGAAGGTTCTGAGGTTTTGGCGTATGACGCAAAGAACCTTAAGGCTCTTTATCGAAGAGGCCAGGCATATAAGGAACGAGGCCTGCTACAGGATGCCGTCACTGATTTGAGCAATGCACTTGAAGTGTCTCCTGATGATGATATAATTGGAGAGCTTTTACGGGACACCAAGGAACAGTTGATAAAGGAAGGTGGTCATTGTGCTCCTGGAACGGAAGTTGTCAAACAACATCTATGTCGATCGTTTCCAGATCGACATCTTCTTCTGCAGAAAGCAATCATATTCTTAACGCAAAGGGACAAGGCGAGGACAAAGGAAATTGAACTCTTAATGCAAATGCAGAATTTTAGTGGAAGACAGGGATTGGAATCACCCGCTGATGGTAGACGTTCATCTGAGTCTAGCTACCGTATTGGAGATAATAGAACTTCAGGGGGGACAAATTAG 792 0.4091 MLLSNRHLEFYKSALPQPLTSIQRLYISRLVEKYGADFQRMMMDIKLNPMQHSVATLEKLYFGCFDTLDVARKYKLAKENIKEIPSFQSRKLLLACSLNLMACYLKTRQYDECIKEGSEVLAYDAKNLKALYRRGQAYKERGLLQDAVTDLSNALEVSPDDDIIGELLRDTKEQLIKEGGHCAPGTEVVKQHLCRSFPDRHLLLQKAIIFLTQRDKARTKEIELLMQMQNFSGRQGLESPADGRRSSESSYRIGDNRTSGGTN 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01741 263 Pfam Ribosome biogenesis protein Nop16 13 60 IPR019002 -
Vifa6g01741 263 SUPERFAMILY TPR-like 88 168 IPR011990 GO:0005515
Vifa6g01741 263 ProSiteProfiles TPR repeat profile. 128 161 IPR019734 GO:0005515
Vifa6g01741 263 SMART tpr_5 94 127 IPR019734 GO:0005515
Vifa6g01741 263 SMART tpr_5 128 161 IPR019734 GO:0005515
Vifa6g01741 263 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 69 211 IPR039663 -
Vifa6g01741 263 MobiDBLite consensus disorder prediction 233 263 - -
Vifa6g01741 263 Gene3D Tetratricopeptide repeat domain 58 179 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01741 Vifa-Chr6 651342153 651346427 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01741 88 161 Calmodulin-binding Proteins AT5G48570 44.595 5.19e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01741 - - gmx:100800315 196.823