Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01732 ATGGTCATATTCAAACTCTCTTCAAGCCTCTCAGAAGTTGCATGGCTTCTTCTCCACTACAATACAACCATTCAAGATAATCGTGAAACGTTTGGTGGTCCAAGTTCCATAGCAGGCGATTTCAAATCCATTACTCCATCTCAATTCATCAGAGATGGAGATACCGTCAGTTCACCAAAGGGATTATTTGAGCTTGTTTTCTTTAATCTTAAGAATCCAAACAAACGCTACCTCGGAATTCAATTCAAGAATATTTCAACTCAAAATGTTGTCTGGGTTGCGAATGGTGGCCAGCCAATCAACGACTCTTCTGCAGTTTTGAAGCTAAACAGTTCTGGCAGTTTGGTCCTTACTCACAACAACAAGGTTGTTTGGTTCACAAATTCTTCGACAAAAGCACAGAAACCAGTGGCACAACTCTTGGATACTGGTAATCTTGTCATAAAAGAAGAAGATAGTGTCGACGAAACCTATCTGTGGCAAAGCTTTGACTACCCATCTAACACATTGTTGGCAGGTATGAAGTTGGGATGGGACCTTAAAAGAAATTTGAATAGGCGACTCACAGCATGGAAGAGTGATGATGATCCAACACCAGGAGACTTTACTTGGGGCGTGGTATTGAATCCGTATCCTGATATCTATATGATGGAGGGAGAAACAAAGCTCCACAGACTTGGACCATGGAACGGCTTGCGTTTTAGTGGCATGCCAGAGATGAAGCCTAATCCTGTATTCAGTTACAACTTTGTCAACAATAAAGAAGAGGTTTATTACTCATGGAACAGCAGCGATAGTTCTCTAATATCAAAAGTTGTACTTAACCAAACCAGTAAGGGACGTCCTCGCTATACATGGTCAAAATCCGACAAATCATGGATGCTTCATTCAAGAATGCCAGTTGACTATTGTGACGGGTTCGAGCCTAAGTTTCCTGAAAAATGGAACTCAATGGACTGGTCCCGAGGGTGTGTCAGAAAGCCTCCATTGAACTGCACCAGTGATGGATTTGTCTCAATGACAGGCTTGAAAGTTCCAGACACTACAAATACTAGCGTGGACGAGAGTATTGGTCTAGAACAATGTAGAGACAGATGCTTGAAAATTTGTTCCTGCATGGCCTATAGAAATACAAATATAAGTGGAGCAGGAAGTGGCTGTGTTATGTGGTTTGGTGAATTAATTGATATCAAACTTTTTCCAGTAGGTGATCAAGTTCTGTATATCCGAATGCCTGCTTCAGAATTAGTCGAGCACAGGAGGAACCTGAGAAAAAAACTTGTAATTAGTGTTTCTGCAGCTTTGGGAATGGTTTTACTTGCTATTTACTTTTCCTACAGATTCAGGAGGGTCATTGTTGGGAAGTCACTGGCAGAAGGTGACTATGAAAGACATATGGATGATCAGGATCTGCCCTTGCTTAATTTCTCGACAATTATTATTGCCACTGACAACTTCTCAAAGAAGAACAAAATCGGAGAAGGTGGTTTTGGACTAGTTTATATGGGAAAATTAGGAAGTGGGCTAGAAATTGCGGTAAAGAGACTTTCACAGAGCTCAAAGCAAGGGATGAGAGAGTTCATTAATGAAGTAAAACTTATTGCAAATGTTCAGCATCGAAATCTTGTAAAGCTTATTGGCTGTTGCATTCAGAAACACGAAAAATTGCTAGTTTATGAATACATGGCTAATGGTAGCCTAGACTACCTCATCTTTGATCGTACCAAAAGTCAACTGCTAGATTGGCCAAAGCGTTTCGACATAATATGTGGTATTGCTAGAGGGCTTATGTATCTTCATCAAGATTCTCGATTGAGGATTGTCCATAGAGATCTCAAAGCAAGTAATGTTTTACTGGATGATACTATGAATCCAAAAATATCAGATTTTGGAATGGCTAGAACTTTTGGGGGAAACCAAATTGAAGGAAACACAAATAGGATTGTGGGGACATATGGGTATATGGCACCAGAGTACGCTATTGATGGACAGTTTTCTTCGAAATCTGATGTTTTCAGCTTTGGTGTTTTAATATTAGAGATTATATGCGGGAAGAAAAACCGAGTGCTTAATCGTGCTAAGCAAACCCTTAACCTTGTTGCTTATGCATGGACATTCTGGAAACACGGAAGAGCTTTACAAATAATTGACTCGAACATAGAGGATTCATGCATTGTATCTGAAGTATCGCGTTGCATCCATGTAGGACTCTTATGTGTGCAACAATACCCAGAAGATAGGCCTACCATGGCTGATGTGATTCTAATGCTAGGGAGTGAAATGGCATTGGATGATCCTAAGGAGCCAAGTTTTATCACAAGGAAGGAATCTATTGAAGCAAATTCAAATTCAAGTGGGAAGGATAATAGTTCAAACTATGAAATGACCATAACTACTTTAAGTGTTCGGTAA 2412 0.4001 MVIFKLSSSLSEVAWLLLHYNTTIQDNRETFGGPSSIAGDFKSITPSQFIRDGDTVSSPKGLFELVFFNLKNPNKRYLGIQFKNISTQNVVWVANGGQPINDSSAVLKLNSSGSLVLTHNNKVVWFTNSSTKAQKPVAQLLDTGNLVIKEEDSVDETYLWQSFDYPSNTLLAGMKLGWDLKRNLNRRLTAWKSDDDPTPGDFTWGVVLNPYPDIYMMEGETKLHRLGPWNGLRFSGMPEMKPNPVFSYNFVNNKEEVYYSWNSSDSSLISKVVLNQTSKGRPRYTWSKSDKSWMLHSRMPVDYCDGFEPKFPEKWNSMDWSRGCVRKPPLNCTSDGFVSMTGLKVPDTTNTSVDESIGLEQCRDRCLKICSCMAYRNTNISGAGSGCVMWFGELIDIKLFPVGDQVLYIRMPASELVEHRRNLRKKLVISVSAALGMVLLAIYFSYRFRRVIVGKSLAEGDYERHMDDQDLPLLNFSTIIIATDNFSKKNKIGEGGFGLVYMGKLGSGLEIAVKRLSQSSKQGMREFINEVKLIANVQHRNLVKLIGCCIQKHEKLLVYEYMANGSLDYLIFDRTKSQLLDWPKRFDIICGIARGLMYLHQDSRLRIVHRDLKASNVLLDDTMNPKISDFGMARTFGGNQIEGNTNRIVGTYGYMAPEYAIDGQFSSKSDVFSFGVLILEIICGKKNRVLNRAKQTLNLVAYAWTFWKHGRALQIIDSNIEDSCIVSEVSRCIHVGLLCVQQYPEDRPTMADVILMLGSEMALDDPKEPSFITRKESIEANSNSSGKDNSSNYEMTITTLSVR 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01732 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
Vifa6g01732 803 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 42 748 - -
Vifa6g01732 803 MobiDBLite consensus disorder prediction 776 803 - -
Vifa6g01732 803 ProSiteProfiles Protein kinase domain profile. 486 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01732 803 Gene3D Phosphorylase Kinase; domain 1 454 561 - -
Vifa6g01732 803 Pfam Protein tyrosine and serine/threonine kinase 488 754 IPR001245 GO:0004672|GO:0006468
Vifa6g01732 803 SMART ntp_6 332 411 IPR003609 -
Vifa6g01732 803 Pfam D-mannose binding lectin 90 192 IPR001480 -
Vifa6g01732 803 SMART serkin_6 486 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01732 803 CDD STKc_IRAK 492 757 - -
Vifa6g01732 803 ProSiteProfiles Bulb-type lectin domain profile. 41 161 IPR001480 -
Vifa6g01732 803 ProSiteProfiles PAN/Apple domain profile. 332 413 IPR003609 -
Vifa6g01732 803 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 562 765 - -
Vifa6g01732 803 SMART blect_4 47 166 IPR001480 -
Vifa6g01732 803 ProSitePatterns Protein kinases ATP-binding region signature. 492 514 IPR017441 GO:0005524
Vifa6g01732 803 Gene3D Transferase(Phosphotransferase) domain 1 562 772 - -
Vifa6g01732 803 FunFam receptor-like serine/threonine-protein kinase SD1-8 459 561 - -
Vifa6g01732 803 Pfam S-locus glycoprotein domain 225 307 IPR000858 GO:0048544
Vifa6g01732 803 PIRSF SRK 30 306 IPR024171 GO:0004674
Vifa6g01732 803 PIRSF SRK 303 803 IPR024171 GO:0004674
Vifa6g01732 803 SUPERFAMILY Protein kinase-like (PK-like) 470 757 IPR011009 -
Vifa6g01732 803 CDD PAN_AP_plant 328 412 - -
Vifa6g01732 803 SUPERFAMILY alpha-D-mannose-specific plant lectins 90 197 IPR036426 -
Vifa6g01732 803 Pfam PAN-like domain 332 397 IPR003609 -
Vifa6g01732 803 CDD B_lectin 47 166 IPR001480 -
Vifa6g01732 803 Gene3D - 39 163 IPR036426 -
Vifa6g01732 803 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 37 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01732 Vifa-Chr6 649972104 649980386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01732 437 779 Receptor kinase-like Gene Family AT3G45860 51.977 4.86e-118 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa6g01732 PK_Tyr_Ser-Thr 5.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01732 - - gmx:100808807 1039.25