Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01731 ATGGATCAACAAAACCAAACCATGCGTTTGGTTCTTTCCACTGATGCTAAGCCTAGGTTGAAATGGACTCATGAACTTCACCAAAGATTCACTGATGCAATTAACCAACTTGGAGGTGCTGAAAAAGCAACACCGAAGAGTTTGATGAGGTCGATGGCGATTCCAGGACTCACTTTGTATCATCTCAAGAGTCATTTACAGAAATATAGACTTGGAAAAAACCAACTAGTAGAAACCTGTTCTGATGAGAAACAAGATTACATAGAGATTCAAAGCAGTAACAGTCAATGCAGCAGAGAAATCAGTGTCGCGAACGCGAATCAAACTACGGAAAGTTCGAAGATTGCTGAGGCGCTTGAGATACAAATGGAAGTTCAAAAGAAACTCTATGAACAAATCGAGGTGCAGAAACATTTACAGTTTAGAATTGAAGCGCAAGGAAAATACTTACAATCGGTATTAATGAAGGCGCAAGAAGCACTTGCAGGATACAGTTCTTCTTCTTCGTCCGCGGTTGGTGTAGAACATGCTAAAGCAGAACTTTCTCAGTTACTATCAACAATCAACAATGCATGTCCTAGTTCTCCGATTTCAGAACTAACAGAAACACGAGGTTTGAGTTTAAATTTTCTAGAGAGGAAACAAAATAGAGGAACTATGTGTTCTTTATCGAGTTCTCTAACATCATCTGAAAGTTCCGAGAGAAAAGAGGAAAAACAAACCATAAACGAGGCAGAGAACACTCCGAATTACAATAGTGTTTCATTTGAATTGCCTCTAATGGATATTGCTACTAATGATGGAGCTGGAAGGAGAAAAAGAAGTTCTGTTACTGATTTTGATTGTGGCTGTGTTGATCAACCAGACGGAAAACGATGCGGCAAAAAATCGAAGGAATCAGAGTTGTCACAGATGCTTGACTTGAACAGCAAGTATGAGAGAGAGATTGAGTCAAGTTCATTAGAAATAGATTTGAATTGCAGTTCAAGCTTTTAG 996 0.3896 MDQQNQTMRLVLSTDAKPRLKWTHELHQRFTDAINQLGGAEKATPKSLMRSMAIPGLTLYHLKSHLQKYRLGKNQLVETCSDEKQDYIEIQSSNSQCSREISVANANQTTESSKIAEALEIQMEVQKKLYEQIEVQKHLQFRIEAQGKYLQSVLMKAQEALAGYSSSSSSAVGVEHAKAELSQLLSTINNACPSSPISELTETRGLSLNFLERKQNRGTMCSLSSSLTSSESSERKEEKQTINEAENTPNYNSVSFELPLMDIATNDGAGRRKRSSVTDFDCGCVDQPDGKRCGKKSKESELSQMLDLNSKYEREIESSSLEIDLNCSSSF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01731 331 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 265 IPR044848 GO:0003700
Vifa6g01731 331 Pfam MYB-CC type transfactor, LHEQLE motif 114 159 IPR025756 -
Vifa6g01731 331 Gene3D - 16 75 - -
Vifa6g01731 331 SUPERFAMILY Homeodomain-like 16 73 IPR009057 -
Vifa6g01731 331 Coils Coil 116 136 - -
Vifa6g01731 331 Coils Coil 295 315 - -
Vifa6g01731 331 MobiDBLite consensus disorder prediction 221 253 - -
Vifa6g01731 331 FunFam Two-component response regulator 13 77 - -
Vifa6g01731 331 NCBIfam myb-like DNA-binding domain, SHAQKYF class 17 72 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01731 Vifa-Chr6 649880635 649882080 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01731 1 320 G2-like Transcription Factor Family AT1G69580 47.590 4.13e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa6g01731 Myb_CC_LHEQLE 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01731 - - gmx:100805252 403.29