Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01722 ATGAAAGCAACTAGTGTTACAGATAACACTAATGTCCCAACTCATTACCAAACTTCTTATTCCTCTCCTTCTATGGGAACTGTCTATGCAAATATGGATTCTCTATCACTTAACTATGCTTCTTCTTCTTCATCTCAAGACTGCTATGTCTCTAAGGAGGGTACTGCTACTAACTGGTCTTTACCACTTATGAGAGAATGTTATCTTACAAGAAACTTTGAAGAAAACAACAATATTCATGATGTTGAGGAAAGCAATGGTAATGGTTCTGGTGATGGAGTTGAAGAAAGCAGTGACAAAATTGACCTTAATGAAGACATCAACACTAACGAGAATAATAGTGGACACTCTATACTATGTGCAAGAGGTCATTGGAGACCTGCAGAAGATTGTAAGCTCAAAGAACTTGTTGCTCTTTATGGTCCTCAGAACTGGAACCTCATTGCTGAAAAGCTACAAGGAAGATCAGGTAAGAGTTGTAGGCTTAGATGGTTCAACCAGTTAGATCCAAGAATTAACAGAAGATCATTTAGTGAAGAAGAGGAAGAAAGACTAATGCAAGCTCATAGGATTTATGGAAACAAATGGGCTATGATTGCAAGGCTTTTCCCAGGAAGAACTGATAATTCAGTTAAGAATCACTGGCATGTTATAATGGCCAGAAAGTATAGAGAACAATCAAGTGCTTACAGGAGAAGGAGGTTGAATCAATCAGTTTATAGAAGATTAGAAGATAATACAAACTTTGTCTCGAGAGATATAGCCACAGGGATGGGTCCAGTTTCATCATCCTGTTGTGCTATTAACTTCCCAAATGTTTATAATATGACTAGTTTTTCATATCCATCTTTTCATGGTGGTTTTAGAAATGAGTGTTTTAGCCCAATGAGTTTCTACCATAATCATCCCCAACATATGATGTCAATGCAACAGCACCAACAAAACAAGAATCACAATAATAGTAATAGTTACAGTTTCTCATCAAATTCAACCACATCAGCAACAAGAGCACAGTTATTGAACAGTGAAGTTTCGCTAACATCCGTGGCAGCAGAAGACAGAAATGAAGTTCTGATGAGAAATCGCCCTCCATCAGATGCAATACCATTTATTGATTTCCTCGGAGTAGGAGCCACGTGA 1140 0.3772 MKATSVTDNTNVPTHYQTSYSSPSMGTVYANMDSLSLNYASSSSSQDCYVSKEGTATNWSLPLMRECYLTRNFEENNNIHDVEESNGNGSGDGVEESSDKIDLNEDINTNENNSGHSILCARGHWRPAEDCKLKELVALYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRSFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNSVKNHWHVIMARKYREQSSAYRRRRLNQSVYRRLEDNTNFVSRDIATGMGPVSSSCCAINFPNVYNMTSFSYPSFHGGFRNECFSPMSFYHNHPQHMMSMQQHQQNKNHNNSNSYSFSSNSTTSATRAQLLNSEVSLTSVAAEDRNEVLMRNRPPSDAIPFIDFLGVGAT 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01722 379 FunFam MYB transcription factor 175 245 - -
Vifa6g01722 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 122 168 IPR017930 -
Vifa6g01722 379 PANTHER MYB PROTEIN-RELATED 112 321 - -
Vifa6g01722 379 Gene3D - 122 173 - -
Vifa6g01722 379 ProSiteProfiles Myb-like domain profile. 169 219 IPR001005 -
Vifa6g01722 379 SMART sant 121 170 IPR001005 -
Vifa6g01722 379 SMART sant 173 221 IPR001005 -
Vifa6g01722 379 MobiDBLite consensus disorder prediction 1 24 - -
Vifa6g01722 379 Gene3D - 175 244 - -
Vifa6g01722 379 FunFam MYB transcription factor 122 173 - -
Vifa6g01722 379 SUPERFAMILY Homeodomain-like 122 215 IPR009057 -
Vifa6g01722 379 CDD SANT 125 166 IPR001005 -
Vifa6g01722 379 MobiDBLite consensus disorder prediction 310 329 - -
Vifa6g01722 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 169 223 IPR017930 -
Vifa6g01722 379 Pfam Myb-like DNA-binding domain 122 168 IPR001005 -
Vifa6g01722 379 Pfam Myb-like DNA-binding domain 174 217 IPR001005 -
Vifa6g01722 379 ProSiteProfiles Myb-like domain profile. 122 168 IPR001005 -
Vifa6g01722 379 CDD SANT 185 216 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01722 Vifa-Chr6 646395595 646396905 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01722 98 234 MYB Transcription Factor Family AT1G69560 80.576 4.18e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa6g01722 Myb_DNA-binding 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01722 K09422 - gmx:100804537 323.553