Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01721 ATGTTATTTAAGATGAAAGAAGCAAGTGTTAAAGATAACACTAATGGTGTAACTCATTACCAATCTTCTTATTCTTCTCCTTCAATGGGAACTGTCTATGCAAATATGGATTCTCTATCACTTAACTATGCTGCTTCTTCTTCATCTCAAGACTGCTATATCTCTAAGGAGGGTACTGCTACTAACTGGTCTTTACCACTTATGAGAGAATGTTATCTTACAAGAAACTTTGAAGAAAACAACAATATTGATGATGTTGAGGAAAGCAATGGTAATGGTTCTGATTCTGGTGATGGTGTTGAAGAAAACAGTGACAAAATTAACCTCAATGAAGAGCACAACCCTAATGAGAATAATAGTGGACATTCTAAACTATGTGCAAGAGGTCATTGGAGACCTGCAGAAGATTGTAAACTCAAAGAACTTGTTGCTCTTTATGGTCCTCAAAACTGGAACCTCATCGCTGAAAAGCTACAAGGAAGATCAGGTAAGAGTTGTAGGCTTAGATGGTTCAACCAGTTAGATCCAAGAATAAACAGAAGAGCTTTTAGTGAAGAAGAGGAAGAAAGACTAATGCAAGCTCATAGGATTTATGGAAACAAATGGGCTATGATTGCAAGGCTTTTCCCAGGAAGAACTGATAATGCAGTTAAGAATCACTGGCATGTTATAATGGCCAGAAAGTATAGAGAACAATCAAGTGCTTACAGGAGAAGGAGGTTGAATCAATCAGTTTATAGAAGATTAGAAGATAATACAAACTTTGTCTCAAGAGATATAGCCACAGGGATGGATCCAGTTTCGTCACCCTATTGTGCTTTTAACTTCCCAAATGTCTATAATATGACTAGTTTTCCATATCCATCTTTTCATGGTGGTGTTGAATGTGGCTTAAATGGTTCATCTTCCATGAATGGTGGCAAAGAAACCATCTCAAGCAACAAGCAGTCTGTTTCTCCTATTGATTTCTTTCCAGGTGCTAATAGAAATGAGTATTGTAGCCAAATGAAATGGCATGATAGGCCAAGTGATTTACATAATCAACCAATGAGTTTCTACTATAATTATCCCCAATATATGATGCCAATGCCGCACCAACAGCAACAACAAAACAACAATCACAACAACAATAGTACTAATATTTATAGTTTCTCATCGAATTCAACCACAGTAGCGACAAGGGCACAAATATTGAACAGTGAAGTTTCACTATCATCAGTGGCAGCAGAAGAAATAGATCAAGTTCTGATGACTAATCCACCTCCACCTTCAGATGCAATTCCATTTATTGATTTTCTTGGAGTAGGAGCCACATGA 1317 0.3705 MLFKMKEASVKDNTNGVTHYQSSYSSPSMGTVYANMDSLSLNYAASSSSQDCYISKEGTATNWSLPLMRECYLTRNFEENNNIDDVEESNGNGSDSGDGVEENSDKINLNEEHNPNENNSGHSKLCARGHWRPAEDCKLKELVALYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLNQSVYRRLEDNTNFVSRDIATGMDPVSSPYCAFNFPNVYNMTSFPYPSFHGGVECGLNGSSSMNGGKETISSNKQSVSPIDFFPGANRNEYCSQMKWHDRPSDLHNQPMSFYYNYPQYMMPMPHQQQQQNNNHNNNSTNIYSFSSNSTTVATRAQILNSEVSLSSVAAEEIDQVLMTNPPPPSDAIPFIDFLGVGAT 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01721 438 PANTHER MYB PROTEIN-RELATED 118 366 - -
Vifa6g01721 438 FunFam MYB transcription factor 128 179 - -
Vifa6g01721 438 Gene3D - 128 179 - -
Vifa6g01721 438 CDD SANT 131 172 IPR001005 -
Vifa6g01721 438 ProSiteProfiles Myb-like domain profile. 128 174 IPR001005 -
Vifa6g01721 438 CDD SANT 182 222 IPR001005 -
Vifa6g01721 438 ProSiteProfiles Myb-like domain profile. 175 225 IPR001005 -
Vifa6g01721 438 SUPERFAMILY Homeodomain-like 128 221 IPR009057 -
Vifa6g01721 438 FunFam MYB transcription factor 181 251 - -
Vifa6g01721 438 Pfam Myb-like DNA-binding domain 180 223 IPR001005 -
Vifa6g01721 438 Pfam Myb-like DNA-binding domain 128 174 IPR001005 -
Vifa6g01721 438 Gene3D - 181 251 - -
Vifa6g01721 438 SMART sant 179 227 IPR001005 -
Vifa6g01721 438 SMART sant 127 176 IPR001005 -
Vifa6g01721 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 175 229 IPR017930 -
Vifa6g01721 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 174 IPR017930 -
Vifa6g01721 438 MobiDBLite consensus disorder prediction 82 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01721 Vifa-Chr6 644405233 644406769 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01721 104 245 MYB Transcription Factor Family AT1G69560 78.472 7.62e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa6g01721 Myb_DNA-binding 3.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01721 K09422 - gmx:100804537 380.178