Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01719 ATGAATTTCATTGGATTGCTTTTGGTGTGTTCCCTCACTATGTTCTCATCTGTTTCTGCCTATGCTGAAGGATGGACCAATGCTCATGCCACCTTCTATGGAGGGAGTGATGCTTCAGGAACAATGGGTGGGGCTTGTGGTTATGGTAACCTTTACAGTCAAGGTTATGGAACAAACACTGCTGCTTTGAGCACAGCACTTTTCAACAACGGTGGTTGGTGTAACCCTCCTCTCCAGCATTTTGATCTTGCTCAACCTGTTTTTCTTCATATCGCTCAATACAAAGCTGGAATTGTTCCTGTATCTTACAGAAGGGTATCCTGTAGGAGAAAGGGAGGTATAAGGTTCACTATCAATGGACACTCTTACTTCAACCTTGTTCTTATCACAAACGTTGCAGGTGCTGGTGATGTGCATGCTGCTTTCATCAAAGGGTCAAAAACTGGTTGGATTTCCATGTCAAGAAACTGGGGACAGAATTGGCAGAGCAACAATTATCTTAATGGTCAAAGCTTGTCTTTTAAGGTTACTACAAGTGATGGTCGTACTGTTGTCTCCAATAATATTGCTCCAGCTGGATGGTCTTTTGGTCAAACATACACTGGTGCTCAAATCCACTAG 621 0.43 MNFIGLLLVCSLTMFSSVSAYAEGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGGWCNPPLQHFDLAQPVFLHIAQYKAGIVPVSYRRVSCRRKGGIRFTINGHSYFNLVLITNVAGAGDVHAAFIKGSKTGWISMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSNNIAPAGWSFGQTYTGAQIH 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01719 206 SMART dpbb_1 26 103 IPR007112 -
Vifa6g01719 206 SUPERFAMILY Barwin-like endoglucanases 24 131 IPR036908 -
Vifa6g01719 206 SUPERFAMILY PHL pollen allergen 110 202 IPR036749 -
Vifa6g01719 206 Gene3D - 11 76 IPR036908 -
Vifa6g01719 206 Gene3D - 77 109 IPR036908 -
Vifa6g01719 206 CDD DPBB_EXPA_N 24 108 - -
Vifa6g01719 206 FunFam Expansin 113 205 - -
Vifa6g01719 206 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Vifa6g01719 206 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Vifa6g01719 206 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Vifa6g01719 206 Pfam Expansin C-terminal domain 114 191 IPR007117 -
Vifa6g01719 206 PANTHER EXPANSIN-A15 7 71 IPR002963 GO:0009664
Vifa6g01719 206 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 113 IPR007112 -
Vifa6g01719 206 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 123 202 IPR007117 -
Vifa6g01719 206 Gene3D - 113 205 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01719 Vifa-Chr6 642637755 642638721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01719 1 206 Expansin Gene Family AT2G03090 66.129 2.62e-113 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01719 - - gmx:100776066 366.311