Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01717 ATGAGTAACAACAATCTTGTTGGAACCATACCATACCAACTTCCTCCTAATCTCCAACGTTTAAATTTTGCTCATAATAACTTAACCGGGACACTCCCTTACTCTATTTCTAACCTCACCTCTCTTACTCACCTGAATCTCAATCACAATCAGCTCCAGCAACCACTCAATCTTAACTTTCTTAATCTTTCTACCCTCTCCAAATTAGACCTCTCTTTCAATTCTTTGACAGGTGACCTCCCTCCAACTATGAGCTCACTTTCAGGCATTACCACCATGTATATGCAAAACAACCAGTTTACAGGCACTATTGACATTCTTGCTAATCTGACCCTCAATAGTTTGAATGTAGAAAACAATAATTTCACAGGTTGGATTCTGGAGCGGTTGAAAAACATAGACGACCTTCAGACGGGTGGTAATGCGTGGAGCTCAGGACCTGCACCACCCCCTCCTCCTGGGACGCCTCCAATACCTAAAAGCAAACCCAATCCGCTGTCAACTCCCTCCAATCCGTTGCTTAACAATTTCAGATCGCCACTGCATCTCCAGCCGTGTGAACCTCTGTCTCACCACCGGCAACCAGCGACTAGCTCCTCTTTGTTTTCCTTCACATTTTCTGTTCAGCAACAACCCTTCCTCTCTCCGACCTCACTTCCGCGAACTCCATCAAACACCGACTTCCACGGACCAGCAAACCCGATGTCACCCTCCCGTAATCGCGCCGTTACTTCTTGCAACACCACCCACTTTTGCTTCCAGATCCACCAACAACCGCCACTATGCGCATCCTTCGCCAGCGCAGATCTCCACCTCTGA 819 0.4713 MSNNNLVGTIPYQLPPNLQRLNFAHNNLTGTLPYSISNLTSLTHLNLNHNQLQQPLNLNFLNLSTLSKLDLSFNSLTGDLPPTMSSLSGITTMYMQNNQFTGTIDILANLTLNSLNVENNNFTGWILERLKNIDDLQTGGNAWSSGPAPPPPPGTPPIPKSKPNPLSTPSNPLLNNFRSPLHLQPCEPLSHHRQPATSSSLFSFTFSVQQQPFLSPTSLPRTPSNTDFHGPANPMSPSRNRAVTSCNTTHFCFQIHQQPPLCASFASADLHL 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01717 272 ProSiteProfiles Leucine-rich repeat profile. 41 62 IPR001611 GO:0005515
Vifa6g01717 272 MobiDBLite consensus disorder prediction 138 174 - -
Vifa6g01717 272 Gene3D Ribonuclease Inhibitor 1 150 IPR032675 -
Vifa6g01717 272 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 1 154 - -
Vifa6g01717 272 Pfam Leucine rich repeat 15 52 IPR001611 GO:0005515
Vifa6g01717 272 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 2 163 IPR046959 -
Vifa6g01717 272 SUPERFAMILY L domain-like 2 141 - -
Vifa6g01717 272 MobiDBLite consensus disorder prediction 145 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01717 Vifa-Chr6 641727337 641728155 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01717 1 161 Strubbelig Receptor Gene Family AT1G78980 49.068 7.78e-46 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01717 - - psat:127132034 221.861