Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01716 ATGGAGAGTAGTAGTACTATAAGCTCTGAACTCCCTCCTGGCTTTAGGTTCCATCCAACTGATGAGGAGTTAATTGTGTATTACCTTTGTAATCAAGCCACATCAAAGCCATGCCCTGCATCTATTATACCAGAAGTTGATATTTATAAATTTGATCCTTGGGAATTGCCAGATAAATCTGAATTTGTTGAGAATGAATGGTATTTCTTTAGTCCAAGAGAAAGAAAGTACCCAAATGGGGTGAGGCCTAATAGAGCAACTTTATCTGGATATTGGAAAGCTACTGGCACAGACAAACCAATCAATAGTGGATCAAAGCAAATTGGAGTAAAAAAATCTTTAGTCTTTTACAAGGGTAGGCCACCAAAGGGAATCAAAACTAATTGGATTATGCACGAGTACCGATTAATCGGATCACAAAAACAAACCAGCAAACATATTGGATCCATGAGACTAGATGACTGGGTTTTGTGCAGGATCTATAAGAAGAAACACATGGGAAAAACATTGCAACAAAAAGAGGATTATTCAACTCTTCAATTTAATGATTCTTCGATAGCGAATAACGATGAACAAGAAAGGATGAACATGAACCTTACAAGAAGTTGTTCACTTACTTATCTTTTGGATATGAATTACCTTGCTCCAATGTTATCTGATGCTTCAACTTTTGATTTTCAAATCAATAACTCTAACATTGGGATAGACCCTTTTGTAAGACCTCAGCAAGTTGAAATGAGTAACCATTATGAAGCAGATTCACAAAGTAGCATCACAAATCAGCCATTATTTGTGAAGCAAATGCATAATTATTTAGGATAA 822 0.3577 MESSSTISSELPPGFRFHPTDEELIVYYLCNQATSKPCPASIIPEVDIYKFDPWELPDKSEFVENEWYFFSPRERKYPNGVRPNRATLSGYWKATGTDKPINSGSKQIGVKKSLVFYKGRPPKGIKTNWIMHEYRLIGSQKQTSKHIGSMRLDDWVLCRIYKKKHMGKTLQQKEDYSTLQFNDSSIANNDEQERMNMNLTRSCSLTYLLDMNYLAPMLSDASTFDFQINNSNIGIDPFVRPQQVEMSNHYEADSQSSITNQPLFVKQMHNYLG 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01716 273 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 222 - -
Vifa6g01716 273 Gene3D NAC domain 20 167 IPR036093 GO:0003677|GO:0006355
Vifa6g01716 273 SUPERFAMILY NAC domain 5 163 IPR036093 GO:0003677|GO:0006355
Vifa6g01716 273 ProSiteProfiles NAC domain profile. 11 163 IPR003441 GO:0003677|GO:0006355
Vifa6g01716 273 Pfam No apical meristem (NAM) protein 12 136 IPR003441 GO:0003677|GO:0006355
Vifa6g01716 273 FunFam NAC transcription factor 20 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01716 Vifa-Chr6 641158620 641159930 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01716 6 225 NAC Transcription Factor Family AT1G69490 64.224 6.09e-109 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa6g01716 NAM 4.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01716 - - gmx:100785110 406.757