Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01714 ATGGGAGGCTTCATGTTAGGTTCGAAGAAAAAGAAAAACAATAAAACTCAAGGTGGTTTTGAAACAATGGGTTTGAATCCCAACGTGTTTAGGGGAGTGAGGCGTAAGGGTTACAAAGTGCCGACTCCAATTCAGAGGAAGACGATGCCGTTGATCCTCTCCGGCGTCGATGTTGTTGCCATGGCTCGTACTGGTTCTGGCAAAACGGCTGCGTTTCTTGTTCCTATGCTTCATAAGCTTAATCAGCATGTTCCTCAGGCTGGCGTTAGAGGACTCATTTTGTCACCAACTAGGGATTTGGCTCTTCAGACTCTCAAATTTACTCAAGAGCTTGGTCACTTCACAGACCTTCGTGTTAGTTTGTTGGTTGGTGGTGATAGTATGGAAAGTCAGTTTGTGGAGTTATCTCAGAGTCCAGACATTATAATTGCCACTCCTGGTAGGCTCATGCACCATTTGTCTGAGGTTGATGACATGTCGCTGCGTAAGGTGGAGTATGTTGTTTTTGATGAGGCTGATTGTTTATTTGGTATGGGTTTTGCTGAGCAGCTACATCAAATTCTCGCTCAGCTTGGTGATAATCGTCAGACCTTGCTTTTCAGTGCGACATTACCTAGCGCTCTTGCAGAATTTGCTAAGGCTGGTCTGCGAGAGCCTCGCCTTGTTCGTCTTGATTTGGAAACTAAAATTAGTCCTGATTTGAAGCTTGTGTTTTTCACTTTGAGGCAAGAAGAGAAGTATGCTGCTTTGCTCTATTTAATTAGGGAACTTATTGGTTCGGATGAGCAGACTTTAATTTTTGTATCTACTAAACATCATGTTGAGTTTCTCAACTCATTGTTTCAACACGAGGGTATTGAGCCCTCTGTATGTTATGGAGACATGGATCAAGATGCTCGGAAAATGCACGTGTCTAGGTTTAGGTCAAGAAAGACAATGTTGTTGATTGTCACTGATATTGCTGCTCGAGGAATTGATATTCCATTGCTTGATAATGTTATCAATTGGGACTTCTCGCCCAAGCCTAAAATATTTGTTCATCGAGTTGGAAGGGTTGCAAGGGCGGGTCGTACTGGTACGGCTTATTCGTTCTTGACTACTGAGGATATGGCTTATCTCTTGGATCTTCATTTGTTTCTCTCTAAACCAGTCAAAGCTGCTCCCACCGAAGAAGAGGTCTTGAAGGATATGGATGGGGTAATGTCAAGAATTGACCAGGCAATGGCAAATGGAGAAACCATTTATGGTCGTTTCCCTCAAAAAGTCATTGACCTTGTTTCTGACAGAGTTAGGGAAGTTATTGATACTCATGCAGAGCTGGAATCGTTGCAGAGAACCTGTAAAAATGCATTTCGTTTATATTCTAAAACAAAACCCCTACCCTCAAAGGAGTCCATTAGAAGAGTAAAGGATTTGCCACCAGAAGGTCTCCATCCAATTTTTAACAAAGTGTTGGGGACGGGGGAGTTAACAGCACTTGCATTTTCTGAGCATTTGAAAACGTTTAGGCCAAAGCAGACCATTTTGGAAGCGGAAGGAGAAGCAGCCAAATCAAAGCGTAGAGCAGGCCCTTCTGGTCAATGGGTTGATGTGATGAAGAGGAAAAGAGACATTCATGAATCTACTATAAATTTGTTTCTTGAACAAAAGTCTAAGAGTACTAGTGAAAAGGAGGAATATCAACAGGAACCTACTTCTGTGGGGAAAGGGAGAAAAGCTGCCCGTGGTTTTAAGAGAAAGCTAGAAAGTTTCAAGGACGAGGATAACTACATAAGTTCCATACCTAAAAATCGTCACATGGAGGCAGGCCTTGCAGTAAAAGCTAATGAAGGCTTTTCTTCAAATAGATTGGAAGAAGCTGTCCTAGATCTAGTTGCAGATGATGGTACTGGCATTAAGAAACAAAAATCTGTATATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTGAACAACGGTGACCGTGTTACTGCAAGTGGAAAGATAAAGACAGAGAGTGGTGCAAAAACAAAGGCCAACAAGACTGGCATCTATAAAAAGTGGAAGGAACGCTCACACTCCAAGATATCTCTTAGAGGGACAAATACTGATGGTGATGCTCAGGAATCAACAAGTTTGAAAGGAGGACCTTACCAAGGAGGTGGTAGGAATTTTAGAGATGGCAGGAAGCAGCATTCAATGCCCAATGCTCATGTGCGTTCAGAAATCAAAGATGTGGATCAAATTAGAAAGGAGAGGCAGAAGAAAGCCAGCAAAATTTCTTATATGAAGAGCAAGTCGCCAAAGGGTAAAAAACCTGGCAGAAAGGGGGGCAATAAGGGCAATAAGGGGGGAAATAAAAGAAGAGGGGCCAAGTAA 2361 0.4244 MGGFMLGSKKKKNNKTQGGFETMGLNPNVFRGVRRKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLVPMLHKLNQHVPQAGVRGLILSPTRDLALQTLKFTQELGHFTDLRVSLLVGGDSMESQFVELSQSPDIIIATPGRLMHHLSEVDDMSLRKVEYVVFDEADCLFGMGFAEQLHQILAQLGDNRQTLLFSATLPSALAEFAKAGLREPRLVRLDLETKISPDLKLVFFTLRQEEKYAALLYLIRELIGSDEQTLIFVSTKHHVEFLNSLFQHEGIEPSVCYGDMDQDARKMHVSRFRSRKTMLLIVTDIAARGIDIPLLDNVINWDFSPKPKIFVHRVGRVARAGRTGTAYSFLTTEDMAYLLDLHLFLSKPVKAAPTEEEVLKDMDGVMSRIDQAMANGETIYGRFPQKVIDLVSDRVREVIDTHAELESLQRTCKNAFRLYSKTKPLPSKESIRRVKDLPPEGLHPIFNKVLGTGELTALAFSEHLKTFRPKQTILEAEGEAAKSKRRAGPSGQWVDVMKRKRDIHESTINLFLEQKSKSTSEKEEYQQEPTSVGKGRKAARGFKRKLESFKDEDNYISSIPKNRHMEAGLAVKANEGFSSNRLEEAVLDLVADDGTGIKKQKSVYHWDKRSKKYIKLNNGDRVTASGKIKTESGAKTKANKTGIYKKWKERSHSKISLRGTNTDGDAQESTSLKGGPYQGGGRNFRDGRKQHSMPNAHVRSEIKDVDQIRKERQKKASKISYMKSKSPKGKKPGRKGGNKGNKGGNKRRGAK 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01714 786 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
Vifa6g01714 786 MobiDBLite consensus disorder prediction 677 691 - -
Vifa6g01714 786 Gene3D - 5 225 IPR027417 -
Vifa6g01714 786 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 395 IPR001650 -
Vifa6g01714 786 Pfam DEAD/DEAH box helicase 42 209 IPR011545 GO:0003676|GO:0005524
Vifa6g01714 786 Pfam Helicase conserved C-terminal domain 246 356 IPR001650 -
Vifa6g01714 786 CDD SF2_C_DEAD 244 365 - -
Vifa6g01714 786 SMART helicmild6 275 356 IPR001650 -
Vifa6g01714 786 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
Vifa6g01714 786 MobiDBLite consensus disorder prediction 549 574 - -
Vifa6g01714 786 MobiDBLite consensus disorder prediction 551 565 - -
Vifa6g01714 786 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 9 688 - -
Vifa6g01714 786 Gene3D - 235 460 IPR027417 -
Vifa6g01714 786 MobiDBLite consensus disorder prediction 719 753 - -
Vifa6g01714 786 MobiDBLite consensus disorder prediction 1 21 - -
Vifa6g01714 786 SMART ultradead3 37 237 IPR014001 -
Vifa6g01714 786 CDD DEADc_DDX54 18 223 IPR033517 -
Vifa6g01714 786 SMART DBP10CT_2 623 685 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Vifa6g01714 786 MobiDBLite consensus disorder prediction 692 711 - -
Vifa6g01714 786 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 374 IPR027417 -
Vifa6g01714 786 MobiDBLite consensus disorder prediction 754 786 - -
Vifa6g01714 786 MobiDBLite consensus disorder prediction 664 786 - -
Vifa6g01714 786 Pfam DBP10CT (NUC160) domain 623 684 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01714 Vifa-Chr6 640537539 640546238 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01714 20 389 Eukaryotic Initiation Factors Gene Family AT1G72730 31.720 2.50e-56 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01714 K14808 - gmx:100806274 1246.11