Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01713 ATGGGAGGCTTCATGTTAGGTTCGAAGAAAAAGAAAAACAATAAAACTCAAGGTGGTTTTGAAACAATGGGTTTGAATCCCAACGTGTTTAGGGGAGTGAGGCGTAAGGGTTACAAAGTGCCGACTCCAATTCAGAGGAAGACGATGCCGTTGATCCTCTCCGGCGTCGATGTTGTTGCCATGGCTCGTACTGGTTCTGGCAAAACGGCTGCGTTTCTTGTTCCTATGCTTCATAAGCTTAATCAGCATGTTCCTCAGGCTGGCGTTAGAGGACTCATTTTGTCACCAACTAGGGATTTGGCTCTTCAGACTCTCAAATTTACTCAAGAGCTTGGTCACTTCACAGACCTTCGTGTTAGTTTGTTGGTTGGTGGTGATAGTATGGAAAGTCAGTTTGTGGAGTTATCTCAGAGTCCAGACATTATAATTGCCACTCCTGGTAGGCTCATGCACCATTTGTCTGAGGTTGATGACATGTCGCTGCGTAAGGTGGAGTATGTTGTTTTTGATGAGGCTGATTGTTTATTTGGTATGGGTTTTGCTGAGCAGCTACATCAAATTCTCGCTCAGCTTGGTGATAATCGTCAGACCTTGCTTTTCAGTGCGACATTACCTAGCGCTCTTGCAGAATTTGCTAAGGCTGGTCTGCGAGAGCCTCGCCTTGTTCGTCTTGATTTGGAAACTAAAATTAGTCCTGATTTGAAGCTTGTGTTTTTCACTTTGAGGCAAGAAGAGAAGTATGCTGCTTTGCTCTATTTAATTAGGGAACTTATTGGTTCGGATGAGCAGACTTTAATTTTTGTATCTACTAAACATCATGTTGAGTTTCTCAACTCATTGTTTCAACACGAGGGTATTGAGCCCTCTGTATGTTATGGAGACATGGATCAAGATGCTCGGAAAATGCACGTGTCTAGGTTTAGGTCAAGAAAGACAATGTTGTTGATTGTCACTGATATTGCTGCTCGAGGAATTGATATTCCATTGCTTGATAATGTTATCAATTGGGACTTCTCGCCCAAGCCTAAAATATTTGTTCATCGAGTTGGAAGGGTTGCAAGGGCGGGTCGTACTGTCAAAGCTGCTCCCACCGAAGAAGAGGTCTTGAAGGATATGGATGGGGTAATGTCAAGAATTGACCAGGCAATGGCAAATGGAGAAACCATTTATGGTCGTTTCCCTCAAAAAGTCATTGACCTTGTTTCTGACAGAGTTAGGGAAGTTATTGATACTCATGCAGAGCTGGAATCGTTGCAGAGAACCTGTAAAAATGCATTTCGTTTATATTCTAAAACAAAACCCCTACCCTCAAAGGAGTCCATTAGAAGAGTAAAGGATTTGCCACCAGAAGGTCTCCATCCAATTTTTAACAAAGTGTTGGGGACGGGGGAGTTAACAGCACTTGCATTTTCTGAGCATTTGAAAACGTTTAGGCCAAAGCAGACCATTTTGGAAGCGGAAGGAGAAGCAGCCAAATCAAAGCGTAGAGCAGGCCCTTCTGGTCAATGGGTTGATGTGATGAAGAGGAAAAGAGACATTCATGAATCTACTATAAATTTGTTTCTTGAACAAAAGTCTAAGAGTACTAGTGAAAAGGAGGAATATCAACAGGAACCTACTTCTGTGGGGAAAGGGAGAAAAGCTGCCCGTGGTTTTAAGAGAAAGCTAGAAAGTTTCAAGGACGAGGATAACTACATAAGTTCCATACCTAAAAATCGTCACATGGAGGCAGGCCTTGCAGTAAAAGCTAATGAAGGCTTTTCTTCAAATAGATTGGAAGAAGCTGTCCTAGATCTAGTTGCAGATGATGGTACTGGCATTAAGAAACAAAAATCTGTATATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTGAACAACGGTGACCGTGTTACTGCAAGTGGAAAGATAAAGACAGAGAGTGGTGCAAAAACAAAGGCCAACAAGACTGGCATCTATAAAAAGTGGAAGGAACGCTCACACTCCAAGATATCTCTTAGAGGGACAAATACTGATGGTGATGCTCAGGAATCAACAAGTTTGAAAGGAGGACCTTACCAAGGAGGTGGTAGGAATTTTAGAGATGGCAGGAAGCAGCATTCAATGCCCAATGCTCATGTGCGTTCAGAAATCAAAGATGTGGATCAAATTAGAAAGGAGAGGCAGAAGAAAGCCAGCAAAATTTCTTATATGAAGAGCAAGTCGCCAAAGGGTAAAAAACCTGGCAGAAAGGGGGGCAATAAGGGCAATAAGGGGGGAAATAAAAGAAGAGGGGCCAAGTAA 2286 0.4252 MGGFMLGSKKKKNNKTQGGFETMGLNPNVFRGVRRKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLVPMLHKLNQHVPQAGVRGLILSPTRDLALQTLKFTQELGHFTDLRVSLLVGGDSMESQFVELSQSPDIIIATPGRLMHHLSEVDDMSLRKVEYVVFDEADCLFGMGFAEQLHQILAQLGDNRQTLLFSATLPSALAEFAKAGLREPRLVRLDLETKISPDLKLVFFTLRQEEKYAALLYLIRELIGSDEQTLIFVSTKHHVEFLNSLFQHEGIEPSVCYGDMDQDARKMHVSRFRSRKTMLLIVTDIAARGIDIPLLDNVINWDFSPKPKIFVHRVGRVARAGRTVKAAPTEEEVLKDMDGVMSRIDQAMANGETIYGRFPQKVIDLVSDRVREVIDTHAELESLQRTCKNAFRLYSKTKPLPSKESIRRVKDLPPEGLHPIFNKVLGTGELTALAFSEHLKTFRPKQTILEAEGEAAKSKRRAGPSGQWVDVMKRKRDIHESTINLFLEQKSKSTSEKEEYQQEPTSVGKGRKAARGFKRKLESFKDEDNYISSIPKNRHMEAGLAVKANEGFSSNRLEEAVLDLVADDGTGIKKQKSVYHWDKRSKKYIKLNNGDRVTASGKIKTESGAKTKANKTGIYKKWKERSHSKISLRGTNTDGDAQESTSLKGGPYQGGGRNFRDGRKQHSMPNAHVRSEIKDVDQIRKERQKKASKISYMKSKSPKGKKPGRKGGNKGNKGGNKRRGAK 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01713 761 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
Vifa6g01713 761 MobiDBLite consensus disorder prediction 694 728 - -
Vifa6g01713 761 MobiDBLite consensus disorder prediction 652 666 - -
Vifa6g01713 761 SMART helicmild6 275 356 IPR001650 -
Vifa6g01713 761 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
Vifa6g01713 761 MobiDBLite consensus disorder prediction 639 761 - -
Vifa6g01713 761 Pfam Helicase conserved C-terminal domain 246 356 IPR001650 -
Vifa6g01713 761 MobiDBLite consensus disorder prediction 1 21 - -
Vifa6g01713 761 MobiDBLite consensus disorder prediction 667 686 - -
Vifa6g01713 761 Gene3D - 224 386 IPR027417 -
Vifa6g01713 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 389 IPR027417 -
Vifa6g01713 761 SMART ultradead3 37 237 IPR014001 -
Vifa6g01713 761 MobiDBLite consensus disorder prediction 524 549 - -
Vifa6g01713 761 MobiDBLite consensus disorder prediction 526 540 - -
Vifa6g01713 761 CDD SF2_C_DEAD 244 361 - -
Vifa6g01713 761 SMART DBP10CT_2 598 660 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Vifa6g01713 761 Pfam DEAD/DEAH box helicase 42 209 IPR011545 GO:0003676|GO:0005524
Vifa6g01713 761 MobiDBLite consensus disorder prediction 729 761 - -
Vifa6g01713 761 CDD DEADc_DDX54 18 223 IPR033517 -
Vifa6g01713 761 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 401 IPR001650 -
Vifa6g01713 761 Pfam DBP10CT (NUC160) domain 598 659 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Vifa6g01713 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 223 IPR027417 -
Vifa6g01713 761 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 9 663 - -
Vifa6g01713 761 Gene3D - 5 223 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01713 Vifa-Chr6 640537539 640546238 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01713 20 357 Eukaryotic Initiation Factors Gene Family AT3G13920 32.353 3.36e-50 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01713 K14808 - gmx:100806274 1186.02