Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01710 ATGGCGGGTCCTCTTCTTCTTCGTTCTCTCTGGTCTTCCACCAGAAAATCATTTTCCACTCCATCTCCCTCTCGTTACTTCTCCCGCCCCTTCTCCGCCGCTCCCGCCGCCGCTTCACCCTCTTCCGATCCCACCGGATCCCTCGACCCCGCCCGCCTTCGCAACGTCGCCGTCATAGCTCATGTCGACCACGGTAAGACAACGCTCATGGACCGTCTGCTCCGCCAGTGCGGCGCTGATATCCCGCACGAGCGCGCCATGGATTCCATCACTCTCGAACGCGAGCGCGGCATCACTATCTCTTCCAAGGTTACTTCTATTGCATGGAAAGAAAATGAACTCAACATGGTGGATACTCCTGGACATGCCGATTTTGGTGGCGAGGTTGAACGTGTAGTTGGTATGGTTGAGGGAGCAGTTTTGGTTGTTGATGCTGGGGAAGGTCCACTTGCTCAAACTAAGTTTGTTCTTGCGAAAGCCTTAAAGTATGGGTTGCGGCCTATTCTTCTTTTAAACAAAGTAGACCGACCTGCAGTTACTGAGGAGATATGTGATGAGGTTGAGAGTCTGGTGTTTGATCTATTTGCGAACCTGGGTGCTACAGAGGAGCAACTTGACTTCCCAGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCATCCACCACCTATACCAAGGATCCTCCTGCCGAGGCCAAAAATATGTCACAGTTGCTTGATGCCATCGTAACACATGTTCCTCCACCAAATGCAAACATTGATGCACCTTTCCAAATGCTGGTTTCTATGATGGAGAAGGACTTTTATCTTGGGCGGATTTTGACTGGACGTGTGTATTCTGGGGTTGTTCGTGTTGGTGACAGGGTTCACGGACTACGTAACAAAGATTCTGGTGCTGAAAAGGTTGAAGAAGGAAAGGTGGTGAAACTGATGAAAAAGAAGGGTACAGCCATGGTTGTAACTGATTGTGCTGGAGCTGGTGATATAATTTCAATTGCTGGTTTGGCAACTCCATCTATCGGCCATACAGTCACTACTGTGGAGATTATGTCTGCATTACCCACAGTTGAATTGGACCCACCAACAATTTCTATGACCTTTGGTGTAAACGATTCCCCATTAGCTGGTCGTGATGGTACTCATTTGACTGGGGGAAGAATTGGTGATCGACTATCGGCTGAAGCTGAAACCAACCTTGCCATAAATGTGCTTCCAGGCTTGTCAGAAACGTTTGAAGTTCAAGGAAGAGGAGAACTACAGTTGGGTATTTTAATTGAGAATATGAGGCGGGAGGGATTTGAGCTATCTGTCTCTCCACCTAAAGTCATGTATAAAACCGAAAAAGGTCAGAAACTTGAGCCAATAGAAGAGGTTACAATCGAGGTAAATGATGAGCACGTTGGCTTTGTAATGGAGGCTTTATCTCACAGACGAGCTGAGGTTAACGACATGGGTCCTGTCGCCGGTGCTATTGGTCGAACTAGATTGTCCTTGACTTGTCCATCAAGGGGCCTGGTTGGTTACAGGAGTGTGTTCAGCAGTGAGACACGTGGAACTGGGTTCATGCACCGTGCTTTCCTCACATATGAAAAATTTCGAGGCCCTCTTGGCAATGTGAGGAAAGGAGTACTGGTGTCAGTGGGTTATGGTCCAATCACATCTCATGCATTAATGAGCTTAGAAGCTCGTGGGACTCTTTTTGTATCTCCTGGAATGGAGACATATGATGGTATGATTGTTGGAGAACACTCCAGGGATACAGATCTTGATGTTAATCCAGTGAGGGCTAAACAACTTACAAATATACGCTCTGCTTCCAAGGATGAGAATGTGAAGCTGACTCCTCCCCGCCTCATGACTCTTGAAGAAGCTATAGGATATGTAGCTTCAGATGAGCTCATCGAGGTTACTCCAAAGACCATCCGGTTAAGGAAGAAATATCTTGATGTTAACAAGCGTAAAACCATGAGTAAAAAGCCAAAAGAATGA 1986 0.4713 MAGPLLLRSLWSSTRKSFSTPSPSRYFSRPFSAAPAAASPSSDPTGSLDPARLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSITLERERGITISSKVTSIAWKENELNMVDTPGHADFGGEVERVVGMVEGAVLVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVTEEICDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTYTKDPPAEAKNMSQLLDAIVTHVPPPNANIDAPFQMLVSMMEKDFYLGRILTGRVYSGVVRVGDRVHGLRNKDSGAEKVEEGKVVKLMKKKGTAMVVTDCAGAGDIISIAGLATPSIGHTVTTVEIMSALPTVELDPPTISMTFGVNDSPLAGRDGTHLTGGRIGDRLSAEAETNLAINVLPGLSETFEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTEKGQKLEPIEEVTIEVNDEHVGFVMEALSHRRAEVNDMGPVAGAIGRTRLSLTCPSRGLVGYRSVFSSETRGTGFMHRAFLTYEKFRGPLGNVRKGVLVSVGYGPITSHALMSLEARGTLFVSPGMETYDGMIVGEHSRDTDLDVNPVRAKQLTNIRSASKDENVKLTPPRLMTLEEAIGYVASDELIEVTPKTIRLRKKYLDVNKRKTMSKKPKE 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01710 661 FunFam GTP-binding protein TypA 361 468 - -
Vifa6g01710 661 SUPERFAMILY EF-G C-terminal domain-like 358 441 IPR035647 -
Vifa6g01710 661 FunFam GTP-binding protein TypA 538 624 - -
Vifa6g01710 661 FunFam GTP-binding protein TypA 52 249 - -
Vifa6g01710 661 NCBIfam small GTP-binding protein domain 54 189 IPR005225 GO:0005525
Vifa6g01710 661 Gene3D - 443 537 - -
Vifa6g01710 661 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 88 103 IPR031157 -
Vifa6g01710 661 CDD BipA_III 360 437 IPR047043 -
Vifa6g01710 661 Pfam Elongation factor Tu domain 2 270 344 IPR004161 GO:0005525
Vifa6g01710 661 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 50 223 - -
Vifa6g01710 661 FunFam GTP-binding protein TypA 443 537 - -
Vifa6g01710 661 CDD TypA_BipA 53 248 IPR047041 -
Vifa6g01710 661 Gene3D bipa protein 538 653 IPR042116 -
Vifa6g01710 661 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 51 249 IPR000795 GO:0003924|GO:0005525
Vifa6g01710 661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 258 IPR027417 -
Vifa6g01710 661 NCBIfam translational GTPase TypA/BipA 53 653 IPR006298 GO:0003924|GO:0005525
Vifa6g01710 661 PRINTS GTP-binding elongation factor signature 95 103 IPR000795 GO:0003924|GO:0005525
Vifa6g01710 661 PRINTS GTP-binding elongation factor signature 167 176 IPR000795 GO:0003924|GO:0005525
Vifa6g01710 661 PRINTS GTP-binding elongation factor signature 131 142 IPR000795 GO:0003924|GO:0005525
Vifa6g01710 661 PRINTS GTP-binding elongation factor signature 115 125 IPR000795 GO:0003924|GO:0005525
Vifa6g01710 661 PRINTS GTP-binding elongation factor signature 55 68 IPR000795 GO:0003924|GO:0005525
Vifa6g01710 661 CDD BipA_TypA_C 452 532 IPR035651 -
Vifa6g01710 661 Gene3D Translation factors 250 354 - -
Vifa6g01710 661 Gene3D - 51 249 IPR027417 -
Vifa6g01710 661 Pfam Elongation factor Tu GTP binding domain 52 246 IPR000795 GO:0003924|GO:0005525
Vifa6g01710 661 SUPERFAMILY Translation proteins 198 353 IPR009000 -
Vifa6g01710 661 Pfam Elongation factor G C-terminus 450 533 IPR000640 -
Vifa6g01710 661 FunFam Elongation factor family protein 250 354 - -
Vifa6g01710 661 CDD BipA_TypA_II 256 353 IPR047042 -
Vifa6g01710 661 SUPERFAMILY EF-G C-terminal domain-like 452 568 IPR035647 -
Vifa6g01710 661 Gene3D Elongation Factor G (Translational Gtpase), domain 3 361 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01710 Vifa-Chr6 640301100 640316781 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01710 52 176 Eukaryotic Initiation Factors Gene Family AT3G22980 42.748 1.52e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01710 K06207 - gmx:100789218 1145.57