Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01709 ATGTCATCTTTTCATGCTCCTCCTATACTCAACAAGACTGCTTTTTCTAGGATGCAAGAAAATAACAACAACAACAGCGTGACGCGTCAAGCATGTTCAGCATGCAAACACCAAAGAAAAAAATGCAGTGACGGCTGCATATTAGCACCCTATTTTCCATCAAACAAAAGCAAAGAATTTCAAGCAGTTCACAAAGTTTTTGGAGTAAGCAACGTAACAAAAATGGTAACGGGTTGTGAAGAAGCAGATAGAAAAAGAGTTGTGGAATCATTGATTTGGGAAGCATTTTGTAGACAAAAAGATCCTACAAATGGTTCTTTTGGAGTATATAGAAGAGTTTACAACGAGTATAGAAAAGTGTTTGAAGAACTTAGAATGTTGAAAGATCAAAATCAATTATTGCAAATGCAAAGTAATCAAGGTTTAATACCAACTAAACCAATAAGTGATTCTAATGGAATGGATTTTCATCCTCTTCTTCATCATCAGAATAATGGTGGTGGTATTATGGATTATAATACTTTTTGTTCAAGTTATTTACAAGATTATGAGGGTTTGAGGAGTGAAGTTCCTATTCCAATTCAGCAACACCCATCACAGAATTTGAGACAGGTGATGAATTCAATCAGTGAACAATGGCAGCAGGTGGGAGCAGGCACTAGGTCTGGCAATCATCATTCACTGTGA 687 0.3624 MSSFHAPPILNKTAFSRMQENNNNNSVTRQACSACKHQRKKCSDGCILAPYFPSNKSKEFQAVHKVFGVSNVTKMVTGCEEADRKRVVESLIWEAFCRQKDPTNGSFGVYRRVYNEYRKVFEELRMLKDQNQLLQMQSNQGLIPTKPISDSNGMDFHPLLHHQNNGGGIMDYNTFCSSYLQDYEGLRSEVPIPIQQHPSQNLRQVMNSISEQWQQVGAGTRSGNHHSL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01709 228 ProSiteProfiles LOB domain profile. 30 131 IPR004883 -
Vifa6g01709 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 29 195 - -
Vifa6g01709 228 Coils Coil 117 137 - -
Vifa6g01709 228 Pfam Lateral organ boundaries (LOB) domain 31 128 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01709 Vifa-Chr6 639695193 639700118 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01709 30 128 AS2 family AT1G06280 60.606 4.25e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa6g01709 LOB 3.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01709 - - psat:127106721 328.946