Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01706 ATGGCTCAATTACCACCCAAAGTTCCAACTCCAAACATGACTCAACCTTGGCCTGAGTTTTCTTCTCATCAAAAAATGCCTAACCTTAAAGCTATTTCACCACTCAATGCTTCAAACTTTTCCAACAGTCAACAAAACCCTTCATGGGTGGACGAGTTTCTGGACTTCTCGTCCTCAAGACGAGGGGCTCACAGACGGTCCGCGAGTGATTCTGTGACTTTCATTGAGGCGTCGATGACCGAGCATTGTCGCCGTAGAGACGGGGGCAATGAGTTTGAAAGCATCAATGATGAAAAAGAGGATGAGGAGGATGAAAAGCATCACCAAGAGAAACAATTGAAGCATGAATCTGATGAGGATGAATTCGATGAGTGCAAACAGGAAATTGCACGAGTTGTCAATGATGACGATGACGATGCTAATGGAAACACAACTTATTCAAGTCAGAAAATTACTGACCCCAAGAGGGTCAAAAGAATCTTGGCAAATAGACAATCTGCACAAAGATCAAGAGTGAGGAAACTGCAATACATATCAGAGCTTGAGAGAAGTGTGACTTCATTGCAGGCAGAAGTATCAGTACTGTCACCACGAGTTGCATTTCTGGATCATCAGAGGTTGCTTCTAAATGTTGATAACAGTGCTCTCAAGCAAAGAATCGCAGCTCTTGCCCAAGACAAAATCTTCAAAGATGCTCATCAAGAGGCACTGAAGAGGGAGATAGAGAGGCTGAGACAAGTGTATCACCAACAAAACATCAAGAATAATGCTACAACAGTAGTGTCACCATCTCCATCACCTAAACCACCTTGTGATAATGATACTCACATTGAAAACGAGCATATTATCAATGTTTGA 858 0.4254 MAQLPPKVPTPNMTQPWPEFSSHQKMPNLKAISPLNASNFSNSQQNPSWVDEFLDFSSSRRGAHRRSASDSVTFIEASMTEHCRRRDGGNEFESINDEKEDEEDEKHHQEKQLKHESDEDEFDECKQEIARVVNDDDDDANGNTTYSSQKITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNIKNNATTVVSPSPSPKPPCDNDTHIENEHIINV 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01706 285 Gene3D - 154 226 - -
Vifa6g01706 285 MobiDBLite consensus disorder prediction 254 285 - -
Vifa6g01706 285 Coils Coil 92 119 - -
Vifa6g01706 285 Coils Coil 234 254 - -
Vifa6g01706 285 SMART brlzneu 151 215 IPR004827 GO:0003700|GO:0006355
Vifa6g01706 285 MobiDBLite consensus disorder prediction 14 53 - -
Vifa6g01706 285 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 153 205 IPR004827 GO:0003700|GO:0006355
Vifa6g01706 285 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 158 173 IPR004827 GO:0003700|GO:0006355
Vifa6g01706 285 FunFam Basic leucine zipper 61 154 227 - -
Vifa6g01706 285 MobiDBLite consensus disorder prediction 101 138 - -
Vifa6g01706 285 SUPERFAMILY Leucine zipper domain 155 209 IPR046347 GO:0003700|GO:0006355
Vifa6g01706 285 MobiDBLite consensus disorder prediction 79 93 - -
Vifa6g01706 285 Pfam bZIP transcription factor 155 198 IPR004827 GO:0003700|GO:0006355
Vifa6g01706 285 MobiDBLite consensus disorder prediction 1 151 - -
Vifa6g01706 285 CDD bZIP_plant_RF2 156 206 IPR044759 GO:0003700|GO:0006355
Vifa6g01706 285 PANTHER BASIC LEUCINE ZIPPER 34 1 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01706 Vifa-Chr6 638607690 638609593 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01706 1 232 bZIP Transcription Factor Family AT2G42380 50.730 2.12e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa6g01706 bZIP_1 2.8e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01706 - - gmx:100101873 328.176