Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01705 ATGGCTCAATTACCACCCAAAGTTCCAACTCCAAACATGACTCAACCTTGGCCTGAGTTTTCTTCTCATCAAAAAATGCCTAACCTTAAAGCTATTTCACCACTCAATGCTTCAAACTTTTCCAACAGTCAACAAAACCCTTCATGGGTGGACGAGTTTCTGGACTTCTCGTCCTCAAGACGAGGGGCTCACAGACGGTCCGCGAGTGATTCTGTGACTTTCATTGAGGCGTCGATGACCGAGCATTGTCGCCGTAGAGACGGGGGCAATGAGTTTGAAAGGTTTGATGATGAACAATTGATGTCTATGTTTGGTGTGGACGAGGTTTCCAGAAAAAACATGATGCAGCCTCGGCCACCAGCAGCAGCTACATTGTCTTCTAACTCGAACCCTTCAACTCCTTCTGATAATAACAGCATCAATGATGAAAAAGAGGATGAGGAGGATGAAAAGCATCACCAAGAGAAACAATTGAAGCATGAATCTGATGAGGATGAATTCGATGAGTGCAAACAGGAAATTGCACGAGTTGTCAATGATGACGATGACGATGCTAATGGAAACACAACTTATTCAAGTCAGAAAATTACTGACCCCAAGAGGGTCAAAAGAATCTTGGCAAATAGACAATCTGCACAAAGATCAAGAGTGAGGAAACTGCAATACATATCAGAGCTTGAGAGAAGTGTGACTTCATTGCAGGCAGAAGTATCAGTACTGTCACCACGAGTTGCATTTCTGGATCATCAGAGGTTGCTTCTAAATGTTGATAACAGTGCTCTCAAGCAAAGAATCGCAGCTCTTGCCCAAGACAAAATCTTCAAAGATGCTCATCAAGAGGCACTGAAGAGGGAGATAGAGAGGCTGAGACAAGTGTATCACCAACAAAACATCAAGAATAATGCTACAACAGTAGTGTCACCATCTCCATCACCTAAACCACCTTGTGATAATGATACTCACATTGAAAACGAGCATATTATCAATGTTTGA 993 0.427 MAQLPPKVPTPNMTQPWPEFSSHQKMPNLKAISPLNASNFSNSQQNPSWVDEFLDFSSSRRGAHRRSASDSVTFIEASMTEHCRRRDGGNEFERFDDEQLMSMFGVDEVSRKNMMQPRPPAAATLSSNSNPSTPSDNNSINDEKEDEEDEKHHQEKQLKHESDEDEFDECKQEIARVVNDDDDDANGNTTYSSQKITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNIKNNATTVVSPSPSPKPPCDNDTHIENEHIINV 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01705 330 MobiDBLite consensus disorder prediction 145 183 - -
Vifa6g01705 330 PANTHER BASIC LEUCINE ZIPPER 34 1 306 - -
Vifa6g01705 330 MobiDBLite consensus disorder prediction 1 47 - -
Vifa6g01705 330 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 198 250 IPR004827 GO:0003700|GO:0006355
Vifa6g01705 330 MobiDBLite consensus disorder prediction 112 196 - -
Vifa6g01705 330 MobiDBLite consensus disorder prediction 299 330 - -
Vifa6g01705 330 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 203 218 IPR004827 GO:0003700|GO:0006355
Vifa6g01705 330 Coils Coil 279 299 - -
Vifa6g01705 330 MobiDBLite consensus disorder prediction 120 138 - -
Vifa6g01705 330 SUPERFAMILY Leucine zipper domain 200 254 IPR046347 GO:0003700|GO:0006355
Vifa6g01705 330 FunFam Basic leucine zipper 61 199 272 - -
Vifa6g01705 330 SMART brlzneu 196 260 IPR004827 GO:0003700|GO:0006355
Vifa6g01705 330 MobiDBLite consensus disorder prediction 14 47 - -
Vifa6g01705 330 Pfam bZIP transcription factor 200 244 IPR004827 GO:0003700|GO:0006355
Vifa6g01705 330 Gene3D - 199 270 - -
Vifa6g01705 330 CDD bZIP_plant_RF2 201 251 IPR044759 GO:0003700|GO:0006355
Vifa6g01705 330 Coils Coil 137 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01705 Vifa-Chr6 638607690 638609593 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01705 1 277 bZIP Transcription Factor Family AT3G58120 56.081 3.77e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa6g01705 bZIP_2 4.1e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01705 - - gmx:778128 375.555