Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01688 ATGGAAGGAGGTGGTTATAGAAACACCACCGGTGGCCGTAACGGTAACCGTGGCGGTGGTGGTAATGGTCGTGGTAGAGGAAGAGAGTTTCATCGGCAACAACCATCAAGTTCCGGTGTTGGTGGTAGAGGAAGAGGAAGGGAATTTTACCAGCATCAAGAAACCAGTTCCGATAATGGTGGCGGAAGAGGAAGGGGAAGAGAGTTTCATCAGGAACAAGAAACGAGTACCGGTGGTGGCAGAGGAAGAGAGTTTCATCAGCGACAAGAAACGAGTACCGGTGGTGGCAGAGGAAGAGAGTTTCATCAGCGACAAGAAACGAGTACCGGTGGTGGCAGAGGAAGAGAGTTTCATCAGCGACAAGAAACGAGTACCGGTGGTGGCAGAGGAAGAGAGTTTCATCAGCGACAAGAAACCAGTGCCGGTGGCGGCGGCGGCGGCGGCGGCAGAGGAAGAGAGTTTCATCAGCGACAAGAAACCAGTGCGGGTGGTGGCGGAAGAGGAAGAGAGTCTCATCAGCAACAAGAAACCAGTGCCGGTGGCGGCGGCAGAGGAAGAGAGTTTCACCGGCAACAAGAAACCAGTGCCGGTGGTGGCGGCGGCAGAGGAAGAGAGTTTCATCAGCGACAAGAAACGACCGGTGGTGGTGGCAGAGGAAGAGAGCTTCATCAGCAAGAACAAACCGGTGCAGGTGGTGGTGGCGGGGGAAGGACAACATCCCAATCACAAAACTGTTGGTTGCGAAGGCCAAATGTATCTCCCTCCTTCACCAACACAAGTTCATCTTCAACTCCTCCTCTTCCTGTCACTAAGCACACCAATCTTCAACCCCAACTCCAAGTCCAAACTCATCCACTTCCAGATATTGGATCTCTGAAAGTAAAAGAGCAGCCAGGGGAAAGTCCAACAACTAGACCGATACACCGGCCTGACAAGGGCGGGACGGAGTGTATTCGCAGATGCAAACTTCATGTGAATCATTTTCCGGTTACGTACAAACCAGAAAGAACTATCATGCACTACGATATCGATGTGAAGCCTACTTTGCCGCTCGGAAATAATTCTTCGCCTCCAAAGAAGATTTCCAAGTTTGATTTATCTTTGATCAGAGACAAATTGCTTACTGAGAGACCGCTTTTATTGATGACTGCTTATGATGGAGGAACAAACATCTATAGTGCTGGTGAGTTGCCTGAAGAAACTTTTACTGTGGAGATCTCAAGAGGAGAAGGTGAAAGAACTGTTTCTTATACAGTTACTATAAGGCTGGTGAACAAACTCGAGCTTCGCATGTTGAGAGATTACATTAAGGGCAGAGCGTATTCCATTCCGAGGGATATTTTACAGGGAATGGACTTAGTGGTAAAAGAGAATCCAGCAAGGTGCACGGTTGCTTTAGGACGACGTTTCTTTCCCACCAATCCTACCATGAAAGAGATGGATCTCACAGGCGGAATAATTGCAATTGGAGGGTTTCATCATAGTCTCAAGACCACAGCTCAGGGTCTATCTTTGTGTCTTGACTATTCAGTTTTGCCTTTTCCAAAGAAAATGCTAGTCCTGGATTTCCTCCATGAGCGTATAAATAATCTCAATTTGAATCAGTTTGAGAAATTTAGGAAAGTTGTCGAGAAGGAACTCGTTGGATTGAAAGTAAATGTCACTCATAGGTTAACCAAACAAAAATACACCATTGCTGGGTTAACACAGAAAAAAACACGCGATATCACTTTCCTTTGTTTAGACCAAGAGGGCCAAAACCCCCCTATCAGCAAATATCTTACTGACTACTTTGAAGAAAAACACTCCTTAAATATTGAACATAAAAATATTCCTTGTTTGATTTTTCGTGGAAGAAAGACTAATTACATGCCTATGGAGCTCTGCGTCTTGGTCGAGGGTCAGAGGTATCCCACAGACAGTCTGGATTTCTTTGCTTCCACGAAGTTGAAAAATATGTCTGTGGCTAGTCCAAGGGATAGAAAATCTTCAATAGAATTGATGATGGCGTCTCCTGTTGGACCGCACGGCGGTGATATTCTTCAGGATTTTGGAATGGATGTCATCCCTTCCATGACAAATGTGACTGGACGCGTAATTGAGCCTCCAATATTGAAGTTAGGTGATCCAAATGGAAGGAGTGGGACTATGGAACTGAGGCTGGAGAAATGTCATTGGAATTTAGTTGGAAGGTCAATGGTAGATGGAAAATCTGTTGAGCATTGGGGCATCCTTGATTTTACCAGCCAGGGATCTAACCACAAATTTAATCATGATCAGTTTGTAAAAGATCTTAAGATAAAGTACAACATGTTGGGAATTGACATGAAGGATCCTGTTTTTTATGAGGAATCCGAAATGAAGAAACTTGGGGATTACAATTCACTATCTAAATTACTTGAGCGAATAAATCGTCAACCGCGGCTGCAGTTTCTTCTTTGTGTGATGGACAAAAGGGTTGAAGGTTACAAGCGCCTCAAGTGGATTGCAGAGACCAAGGTTGGCATAGTGACACAATGCTGCTTATCTCCTAATGCTAATAAAGGGAAAGACCAATATTTAACAAATCTTGCTTTAAAAATCAATGCGAAAATTGGAGGCAGTAATGTAGAACTCCTTAATAGGATCCCACACTTTGAGAATGACAGGCATGTTATGTTCTTAGGGGCTGATGTCAATCATCCAGGTTCTCAGGACAAAGAAAGTCCATCTATTGTTGCGGTGGTTGCCACAGTTAATTGGCCAGCTGCAAATCGCTATGCAGCACGAGTTCTTGCTCAAGCGCATCGAATGGAGAAGATTTTGAATTTTGGAGATGTTTGCCTTGATCTTGTCACACATTATGCAAAGTTGAACAAAGCCAGGCCCGAAAAAATTGTTATCTTTCGTGATGGTGTAAGTGAAAGCCAGTTTCACATGGTTCTTACAGAGGAGTTGAAAGATTTGAAGACAGCATTTGAGAGTATAAATTACTTTCCAAGTATCACTCTTATTGTAGCTCAAAAGCGACATCAAACTCGATTGTTTCCTGTAGATGCAAATGGGGTTTGTACCGGCAACGTGTTCCCTGGAACAGTTGTAGACACAAATGTGGTACATCCTTTTGAATTTGATTTTTACCTTTGTAGCCACAATGGAAGCCTAGGTACAAGCAAACCAACACACTACCATGTGTTGTGGGACGAGAACAAGTTTAGTTCTGATGATTTGCAGAAACTGATATATAATCTATGCTTTACCTTTGCAAGGTGCACTAGACCTGTATCTTTAGTCCCTCCAGTGTACTATGCTGACCTTGCTGCATATAGAGGAAGACTATACTATGAAGCAAGGAAGTCAGCGATGAGAAATGATGAGGTGTTTGCCAAGTTGCATCCTGATACGGAAAACATAATGTTCTTCGTCTAA 3408 0.4404 MEGGGYRNTTGGRNGNRGGGGNGRGRGREFHRQQPSSSGVGGRGRGREFYQHQETSSDNGGGRGRGREFHQEQETSTGGGRGREFHQRQETSTGGGRGREFHQRQETSTGGGRGREFHQRQETSTGGGRGREFHQRQETSAGGGGGGGGRGREFHQRQETSAGGGGRGRESHQQQETSAGGGGRGREFHRQQETSAGGGGGRGREFHQRQETTGGGGRGRELHQQEQTGAGGGGGGRTTSQSQNCWLRRPNVSPSFTNTSSSSTPPLPVTKHTNLQPQLQVQTHPLPDIGSLKVKEQPGESPTTRPIHRPDKGGTECIRRCKLHVNHFPVTYKPERTIMHYDIDVKPTLPLGNNSSPPKKISKFDLSLIRDKLLTERPLLLMTAYDGGTNIYSAGELPEETFTVEISRGEGERTVSYTVTIRLVNKLELRMLRDYIKGRAYSIPRDILQGMDLVVKENPARCTVALGRRFFPTNPTMKEMDLTGGIIAIGGFHHSLKTTAQGLSLCLDYSVLPFPKKMLVLDFLHERINNLNLNQFEKFRKVVEKELVGLKVNVTHRLTKQKYTIAGLTQKKTRDITFLCLDQEGQNPPISKYLTDYFEEKHSLNIEHKNIPCLIFRGRKTNYMPMELCVLVEGQRYPTDSLDFFASTKLKNMSVASPRDRKSSIELMMASPVGPHGGDILQDFGMDVIPSMTNVTGRVIEPPILKLGDPNGRSGTMELRLEKCHWNLVGRSMVDGKSVEHWGILDFTSQGSNHKFNHDQFVKDLKIKYNMLGIDMKDPVFYEESEMKKLGDYNSLSKLLERINRQPRLQFLLCVMDKRVEGYKRLKWIAETKVGIVTQCCLSPNANKGKDQYLTNLALKINAKIGGSNVELLNRIPHFENDRHVMFLGADVNHPGSQDKESPSIVAVVATVNWPAANRYAARVLAQAHRMEKILNFGDVCLDLVTHYAKLNKARPEKIVIFRDGVSESQFHMVLTEELKDLKTAFESINYFPSITLIVAQKRHQTRLFPVDANGVCTGNVFPGTVVDTNVVHPFEFDFYLCSHNGSLGTSKPTHYHVLWDENKFSSDDLQKLIYNLCFTFARCTRPVSLVPPVYYADLAAYRGRLYYEARKSAMRNDEVFAKLHPDTENIMFFV 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01688 1135 Pfam Piwi domain 812 1108 IPR003165 GO:0003676
Vifa6g01688 1135 Pfam N-terminal domain of argonaute 319 454 IPR032474 -
Vifa6g01688 1135 MobiDBLite consensus disorder prediction 231 285 - -
Vifa6g01688 1135 CDD Piwi_ago-like 680 1108 IPR045246 -
Vifa6g01688 1135 SUPERFAMILY Ribonuclease H-like 797 1109 IPR012337 -
Vifa6g01688 1135 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 318 1111 - -
Vifa6g01688 1135 SMART Piwi_a_2 811 1109 IPR003165 GO:0003676
Vifa6g01688 1135 ProSiteProfiles Piwi domain profile. 811 1109 IPR003165 GO:0003676
Vifa6g01688 1135 Pfam PAZ domain 527 642 IPR003100 GO:0005515
Vifa6g01688 1135 Gene3D - 699 873 - -
Vifa6g01688 1135 MobiDBLite consensus disorder prediction 61 136 - -
Vifa6g01688 1135 Gene3D paz domain 513 637 - -
Vifa6g01688 1135 Gene3D - 879 1135 IPR036397 GO:0003676
Vifa6g01688 1135 MobiDBLite consensus disorder prediction 1 314 - -
Vifa6g01688 1135 Pfam Argonaute linker 1 domain 467 515 IPR014811 -
Vifa6g01688 1135 SMART PAZ_2_a_3 518 665 IPR003100 GO:0005515
Vifa6g01688 1135 SMART DUF1785_2 464 517 IPR014811 -
Vifa6g01688 1135 ProSiteProfiles PAZ domain profile. 518 633 IPR003100 GO:0005515
Vifa6g01688 1135 CDD PAZ_argonaute_like 520 632 - -
Vifa6g01688 1135 SUPERFAMILY PAZ domain 514 666 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01688 Vifa-Chr6 632702665 632706261 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01688 253 1113 Eukaryotic Initiation Factors Gene Family AT1G48410 34.973 5.47e-152 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01688 K11593 - gmx:100805250 1145.18