Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01676 ATGTTCACAACCTCAACCTCATTTCAGCATGTAGTAGTAAGCTTTCTTTCTACCACTGCACCGAATCTCTTGGACGACACCGAATCAAAAGGGCGCAAAAGGATGCACGTAGAAAGATTTTCTGACAAGAAGAAGATCGCGTTCACTCGTGATTCGCTGTCTCAGGTTTTATATTACGACGAATTTGTTAAGGAGTTGGTTCCAGGACACCGAAAAATGGCTATAATATTGGCTGCATCTTCTGCTGTCTTGGCTCTTCTTTTGGTTACTGCAACAATGGGTTTCTTTATAAGAAAGAATGTAATGAGGAAAAGAAGAGAGAGAAAACAATTTGGGACACTTTTGGATACAGTGAATAAATCCAAGCTAAATGTTCCATATGAAATTCTTGAAAAAGCAACAAATTACTTCAATGATGACAATAAGCTAGGACAAGGAGGATCAGGTTCAGTTTATAAAGGAGTTATGCCAGATGGTAATACTGTGGCTGTTAAAAGGCTTAGTTTTAACTCGACGCAATGGGTGGATCATTTCTTCAATGAGGTTAATTTGATTAGTGGAGTTCATCACAAAAATGATGAGAGAAGAAAGAATACTTACACGTCGGAGTCACTCCGCCAACGCTTCAATCGTGATTCAGAGGGAATGCTTCAAGCTTGA 660 0.3924 MFTTSTSFQHVVVSFLSTTAPNLLDDTESKGRKRMHVERFSDKKKIAFTRDSLSQVLYYDEFVKELVPGHRKMAIILAASSAVLALLLVTATMGFFIRKNVMRKRRERKQFGTLLDTVNKSKLNVPYEILEKATNYFNDDNKLGQGGSGSVYKGVMPDGNTVAVKRLSFNSTQWVDHFFNEVNLISGVHHKNDERRKNTYTSESLRQRFNRDSEGMLQA 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01676 219 ProSitePatterns Protein kinases ATP-binding region signature. 143 165 IPR017441 GO:0005524
Vifa6g01676 219 ProSiteProfiles Protein kinase domain profile. 137 219 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01676 219 MobiDBLite consensus disorder prediction 195 219 - -
Vifa6g01676 219 Gene3D Phosphorylase Kinase; domain 1 97 193 - -
Vifa6g01676 219 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 48 192 - -
Vifa6g01676 219 SUPERFAMILY Protein kinase-like (PK-like) 116 192 IPR011009 -
Vifa6g01676 219 MobiDBLite consensus disorder prediction 195 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01676 Vifa-Chr6 628586524 628588369 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01676 69 192 Receptor kinase-like Gene Family AT1G70530 60.484 3.95e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa6g01676 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01676 - - lja:Lj0g3v0155449.1 202.601