Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01657 ATGGCTTCAACTTCATCTTCTCATTCCTCATCATGTATATTATTATTCCTCTTTTTTCTATATTTTTCTTTTTTCTTCAACAATCTCAATGCGAAACACAGCATAACCAACAATCACAGGCATCTCCACAGGCACAACAATATCCACAATCCACCATCAAACATAAGGCTTTATCGTGCATTTCTTGCGCTGCAAGCATGGAAGCAAGTGATCTATTCAGATCCAAATAACATCACTTCCAATTGGGCAGGCCCTTCAGTTTGCAACTACACAGGTATCTACTGTGCTCCATCACTAGACGATCCTAAAACAAAAGTTGTCGCGGGAATCGACCTTAACCACGCAGACATAGCCGGATTCCTACCCGACGAATTAGCCTTCCTATGTGACCTTTCAATTCTCCACCTCAACAGCAACCGTTTCTGCGGCATCATTCCAGAAACCTTCACCAACCTAACACATCTCTCCGAGCTTGACCTTAGCAACAACAGATTCGTCGGTCCGTTTCCTTCTGTCGTTCTTTCCCTTCCTTCCCTTGCCTACCTAGACCTTCGTTACAACGAGTTCGAAGGGCCGTTGCCTTCTCAACTTTTCGACAAACCTTTCGATGCTTTTTTTCTCAACAACAATCGCTTCACAAGTTCTATTCCAAGAAATTTAGGAAAAAGCAAAGCTTCTGTCATGGTTTTCGCTAATAACAATTTTGGAGGATGCTTACCAGAAAGCATAGTAAACTTTGCCGATACTTTAGAAGAACTTCTCTTAATCAACACAAGCATATCAGGATGTCTTCCAATACAAGTTGGATTTCTATACAAGTTAAGAGTTTTGGATGTTAGTTTCAACAACATTGTTGGTCCTATACCTTATAGTCTTTCAGGGTTATCTCATTTGGAGCAGTTAAACATAGGACATAACATGATGAGTGGAATAGTTCCTATGGGAGTTTGTGCTTTACCAAACTTGGTGAATTTCACTTTTTCTTACAACTTTTTCTGTGAGGAAGAGGGTATTTGTAAGAATCTGACATCAAAGAAAATAGTTTATGACGATCAGCACAATTGCTTGCCGAACAAGGCACTGCAGAGAAGTGAAAAGGAATGTAGAGCTAAACTTGAACAGCCACCAGTTGATTGTTTTGAGGTTTGTTGTGTTGAAAGTGGTTTTGGGAAGAATGTTAGTGTTGGTTCTGTGGCTGTTCCACCTTCTGCAATTCCAGTAGCAGCAATGCCAGTTTCTGCTCCTGTTCTTGCACCAAGATACCCTCGACTTTGA 1275 0.4086 MASTSSSHSSSCILLFLFFLYFSFFFNNLNAKHSITNNHRHLHRHNNIHNPPSNIRLYRAFLALQAWKQVIYSDPNNITSNWAGPSVCNYTGIYCAPSLDDPKTKVVAGIDLNHADIAGFLPDELAFLCDLSILHLNSNRFCGIIPETFTNLTHLSELDLSNNRFVGPFPSVVLSLPSLAYLDLRYNEFEGPLPSQLFDKPFDAFFLNNNRFTSSIPRNLGKSKASVMVFANNNFGGCLPESIVNFADTLEELLLINTSISGCLPIQVGFLYKLRVLDVSFNNIVGPIPYSLSGLSHLEQLNIGHNMMSGIVPMGVCALPNLVNFTFSYNFFCEEEGICKNLTSKKIVYDDQHNCLPNKALQRSEKECRAKLEQPPVDCFEVCCVESGFGKNVSVGSVAVPPSAIPVAAMPVSAPVLAPRYPRL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01657 424 Pfam Leucine rich repeat 131 188 IPR001611 GO:0005515
Vifa6g01657 424 Pfam Leucine rich repeat 273 330 IPR001611 GO:0005515
Vifa6g01657 424 SUPERFAMILY L domain-like 61 347 - -
Vifa6g01657 424 Pfam Leucine rich repeat N-terminal domain 62 95 IPR013210 -
Vifa6g01657 424 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 16 387 - -
Vifa6g01657 424 FunFam Leucine-rich repeat extensin-like protein 1 61 222 - -
Vifa6g01657 424 Gene3D Ribonuclease Inhibitor 61 226 IPR032675 -
Vifa6g01657 424 Gene3D Ribonuclease Inhibitor 227 379 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01657 Vifa-Chr6 605827347 605828621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01657 44 387 Leucine-rich Repeat extension Gene Families AT3G24480 53.161 1.07e-130 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01657 - - gmx:100802803 603.594