Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01646 ATGGGGTCTCAAAGCGAAGACCATATCACAAAAATGCTTCAAGCTCAAACCAAAGTATTCAATCACATTTTCAGTTTCATAAACTCAATGTCCCTTAAATGTGCAATTGAATTGTCTATACCAGATGTCATACAAAACTATGGTCAACCTATCCCACTTTCACAACTCATTGCTAAGTTACCAATCCACCCTTCTAAAACCGATGATGTATATCGTTTAATGCGAGTTTTAACACATTCTGGTTTCATCAACGTCATTGAAAATAATGACGTTGAAGAAGTAATGTATGAGCTTAATGATACATCTACATTATTGCTCAAGGATCATCCCTATAGTATGACATCTTTGTTACATCTTATACTTGGTCGAATCATGAGTAAACCATGGTATCAACTTTCTAATTGGTACAAAAATGATGACCTTTCACCTTTTCACACCGAAAATAATGGAGTTGCGTTTTGGGACTATGCTGGTCATGACCCTAAACATAATGAGTTGTTTAATGAAGCTATGGCCTGTGAAACTAGAATGGCTTCTAGTGTTGTGATGGGGAAGTGTAGAGAGGTGTTTGAAAAGATGGAATCTTTGGTTGATGTTGGTGGAGGAAGTGAGAACTTGAAATTTGTTGGAGGGGACATGTTTGAGGCTATTCCTCCTACTCATTCAATTTTACTCAAGGGTGTATTACATGATTGGAACGATGATGAATGTTTGAAAATACTAAAGAAATGCAAGGAAGCAATAATGAGCAATGGAAAAGTGATAATCATAGATGCAGTGATGGGGAATGAAAAAGAAGAGAATGAAACAGTTGAAGCACAATTGTTCTATGATTTGGAGATGATGGTGTTGGTTAATGGAAAAGAGAGAAATGAGAAAGAATGGTCTAAGTTGTTTTTCTCTGCTGGTTTTAGTAACTACAAGATTACTCATGGTCTTGGTTTTAAGTCTTTCATTGAGGTTTTCCCATAG 972 0.3611 MGSQSEDHITKMLQAQTKVFNHIFSFINSMSLKCAIELSIPDVIQNYGQPIPLSQLIAKLPIHPSKTDDVYRLMRVLTHSGFINVIENNDVEEVMYELNDTSTLLLKDHPYSMTSLLHLILGRIMSKPWYQLSNWYKNDDLSPFHTENNGVAFWDYAGHDPKHNELFNEAMACETRMASSVVMGKCREVFEKMESLVDVGGGSENLKFVGGDMFEAIPPTHSILLKGVLHDWNDDECLKILKKCKEAIMSNGKVIIIDAVMGNEKEENETVEAQLFYDLEMMVLVNGKERNEKEWSKLFFSAGFSNYKITHGLGFKSFIEVFP 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01646 323 Gene3D Vaccinia Virus protein VP39 204 323 IPR029063 -
Vifa6g01646 323 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Vifa6g01646 323 Gene3D - 2 105 IPR036388 -
Vifa6g01646 323 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 323 IPR016461 GO:0008168
Vifa6g01646 323 Pfam O-methyltransferase domain 129 203 IPR001077 GO:0008171
Vifa6g01646 323 Pfam O-methyltransferase domain 204 305 IPR001077 GO:0008171
Vifa6g01646 323 SUPERFAMILY "Winged helix" DNA-binding domain 11 110 IPR036390 -
Vifa6g01646 323 PANTHER O-METHYLTRANSFERASE 12 308 IPR016461 GO:0008168
Vifa6g01646 323 Gene3D Vaccinia Virus protein VP39 106 203 IPR029063 -
Vifa6g01646 323 PIRSF O-mtase 1 206 IPR016461 GO:0008168
Vifa6g01646 323 PIRSF O-mtase 203 323 IPR016461 GO:0008168
Vifa6g01646 323 FunFam Coniferyl alcohol 9-O-methyltransferase 3 105 - -
Vifa6g01646 323 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 110 321 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01646 Vifa-Chr6 602578063 602579304 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01646 1 309 Monolignol Biosynthesis Gene Families AT5G54160 27.762 6.09e-34 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01646 - K16040 gmx:100793263 399.438