Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01639 ATGTTATCAAAGATGGATGAAGTAGAAATCACAAATGTTAATTTCCTTCAAAATTCAACAACTAGTACTTCTATTAATCCTACTCCTTTGAAGAGAAAAAGAAACCTCCCCGGAAATCCAGATCCTGAAGCAGAAGTTATAGCTTTATCGCCGAAGACTCTAATGGCTACAAACAGATTCTTGTGTGAAACGTGTGGGAAGGGTTTTCAAAGAGATCAAAATCTACAACTACATAGACGCGGACATAATCTTCCATGGAAGCTTAAGCAACGAACAAACAAGGAAATAAAGAAGAGAGTCTATGTCTGTCCGGAAAAGAGTTGTGTTCATCATGATCCTTCAAGAGCACTTGGTGACTTAACTGGGATAAAAAAGCACTTTTGTAGAAAGCACGGTGAAAAGAAGTGGAAGTGTGAGAAGTGCTCAAAACGCTATGCTGTTCAGTCAGACTGGAAAGCTCATTCCAAAACATGTGGTACTAGAGAATACAAATGTGACTGTGGAACTATCTTTTCAAGGAGAGATAGCTTCATAACTCATAGAGCTTTCTGTGATGCCTTAGCAGAAGAAACAGCAAGGGTAAGTGCAGCATCAGAAATAAACCACAACTCATTAAGGAACAACATTGGTAACTACAACATAATGGGAACATCTTTAGTCCCTAACAACATGTCAACCCATTTTCCTTCAATTTTCAAAACAATTTCATCTCCTGATCATCATCATCATGAAACAACAGCCAATCAAACTAGAGGACTATCCCTTTGGATGAACCAAACATCTCAGCCTCATGAAACAATGATAACCACCAATGGAAACAATAATTTGCATGAGATTCATGTTAATCAACATCTTGACTCATCATCAAGAGGATTAGTATATGGTGGGATCGAGAATCCGAACTCGAATAATTATCAGCTGAATTGGGTTTTTGAAAACAAACTTCCCATAAATTGTAGCCAAGAGTTAATTACTAGCACAACAACTTCACTTCCAATAGGAAACAATAATGTTAATGTTAACGTTAATGTTAAGGATGTTGTTGCTACTCATAATCATGATGCAACAAGCCAGCAAATATCTTCCTTGTATAGCTCACAACACCAAATACCATCACATCAAACATCATCAGCAAACATGTCAGCTACAGCTTTGTTACTGAAAGCTGCTCAAATTGGAGTAACCTCGACCGACACATCATTCCTCGGAAGTTTAGGTTTGAAATGTAGTGACAATACTAATATTGATGTGAACAAGTTTGGTGGTGGTGCTGGTTTGTATGGTTCAAGTTCATTACTCATTAGTCTTGGAAATGAGGAGGATCATAACACTACTGCATGTGATTTCCCACAAATGCACCCTTCTAAACGTAGACATGTCCAGAGTGAAGAGAATGGAGGTGGAGGGCAAACTAGGGATTTTCTTGGTGTTGGTGTGCAAACTATTTGTCACCCTTCATCAATCAACGGATGGATTTGA 1479 0.382 MLSKMDEVEITNVNFLQNSTTSTSINPTPLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTNKEIKKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVSAASEINHNSLRNNIGNYNIMGTSLVPNNMSTHFPSIFKTISSPDHHHHETTANQTRGLSLWMNQTSQPHETMITTNGNNNLHEIHVNQHLDSSSRGLVYGGIENPNSNNYQLNWVFENKLPINCSQELITSTTTSLPIGNNNVNVNVNVKDVVATHNHDATSQQISSLYSSQHQIPSHQTSSANMSATALLLKAAQIGVTSTDTSFLGSLGLKCSDNTNIDVNKFGGGAGLYGSSSLLISLGNEEDHNTTACDFPQMHPSKRRHVQSEENGGGGQTRDFLGVGVQTICHPSSINGWI 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01639 492 MobiDBLite consensus disorder prediction 19 39 - -
Vifa6g01639 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Vifa6g01639 492 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 480 IPR031140 -
Vifa6g01639 492 Gene3D Classic Zinc Finger 129 196 - -
Vifa6g01639 492 MobiDBLite consensus disorder prediction 449 472 - -
Vifa6g01639 492 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Vifa6g01639 492 Gene3D Classic Zinc Finger 39 112 - -
Vifa6g01639 492 FunFam protein indeterminate-domain 5, chloroplastic-like 114 193 - -
Vifa6g01639 492 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Vifa6g01639 492 FunFam protein indeterminate-domain 12-like 39 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01639 Vifa-Chr6 602107710 602110080 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01639 24 492 IDZ Gene Family AT1G03840 50.881 5.80e-147 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa6g01639 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01639 K25870 - qsu:112011855 583.948