Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01637 ATGACTCATTGCAATGAGGTTCAAAATAATCATAGCATCACAGTTGATGGAAGAAAGGATAGCTTAATTAGAACTTGTCTCACATGTGGTCATCATATCAAATGCCAAGATCAGGGTGGTGGAATTAATGACCTACCTGGATTACCTGCTGGAGTGAAGTTTGATCCAACAGATCAAGAGATTCTTGAACATTTGGAAGCAAAAGTGAGGTCTGATATTCATAAACTTCATCCTTTAATTGATGAATTCATACCTACTCTTGAAGGAGAGAATGGAATTTGCTATACTCATCCTGAGAAATTACCAGGTGTAAGCAAAGATGGCCTAATCCGCCATTTCTTCCACCGACCATCGAAGGCATACACAACAGGAACAAGAAAAAGAAGAAAAGTACATTCAGATCACGAAGATGGAAGTGAAACCCGGTGGCACAAAACAGGCAAAACAAGACCAATTTACAACAATTCCAAGTTAAAAGGATACAAAAAAATCCTCGTACTTTACACTAACTATGGAAAGCAAAGAAAACCCGAGAAAACAAGTTGGGTAATGCATCAATACCATCTTGGTAATGATGAAGAAGAGAAAGAAGGAGAGTTAGTTGTGTCCAAAGTTTTCTATCAAACTCAACCAAGACAATGTGGTGGCAACTCATTGATGATGAAAGACTCTCTTGTTGGACAAAGTTTGAAGGGTCAAAGTGGGAATAATATTGAGGTAATGAATGGTGAAAAGAGTATTAATGGATCGTTTGTTGAGTATTATCATTCAAATTTCATATCATTTGATCAAGGGAATCAACATAGATCATCTAGTAATGCTCAAGTGATTTCACATTTTGAAGGTGCTCCTATATGA 858 0.3695 MTHCNEVQNNHSITVDGRKDSLIRTCLTCGHHIKCQDQGGGINDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDHEDGSETRWHKTGKTRPIYNNSKLKGYKKILVLYTNYGKQRKPEKTSWVMHQYHLGNDEEEKEGELVVSKVFYQTQPRQCGGNSLMMKDSLVGQSLKGQSGNNIEVMNGEKSINGSFVEYYHSNFISFDQGNQHRSSSNAQVISHFEGAPI 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01637 285 ProSiteProfiles NAC domain profile. 48 208 IPR003441 GO:0003677|GO:0006355
Vifa6g01637 285 MobiDBLite consensus disorder prediction 122 149 - -
Vifa6g01637 285 Pfam No apical meristem (NAM) protein 49 189 IPR003441 GO:0003677|GO:0006355
Vifa6g01637 285 SUPERFAMILY NAC domain 44 208 IPR036093 GO:0003677|GO:0006355
Vifa6g01637 285 FunFam NAC domain-containing protein 73 57 212 - -
Vifa6g01637 285 Gene3D NAC domain 57 212 IPR036093 GO:0003677|GO:0006355
Vifa6g01637 285 MobiDBLite consensus disorder prediction 127 147 - -
Vifa6g01637 285 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 21 231 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01637 Vifa-Chr6 599776605 599777857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01637 1 217 NAC Transcription Factor Family AT4G28500 70.306 1.55e-115 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa6g01637 NAM 3.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01637 - - gmx:100797459 485.337