Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01634 ATGGAGGGTTGTTCAGAAGGAGAGGAGAACAAGGTGAAGCGCAAAATGAAATCTGCTTCACAGTTGGAGATTCTAGAAAAAGCATATGCTGCGGAGGCGTATCCGTCTGAGGCGTTGAGGGCTGAGCTATCTGTGAAGTTAGGTTTGTCTGATCGTCAGTTGCAGATGTGGTTCTGTCACCGGAGAGTGAAGGATAGGAAGGCTTCGCCCATTGTTAATAAGGCTGCGGTGCCAATTGGTTATTTGGATGCACAGCAGGTTGTGGCACAGTATGGGGTGATGGGATTTACTAGGATGGGAGCTGGATTGCCTGCAATGGAAGGCAGTGGTTACCGTGAAGCTCATCAGACGTTACAGGAGCTGCGAGCGGTTGCATTGGTGGAAAGACAGTTGGGGGAGACATTAAGAGAGGATGGACCTATACTTGGGATGGAATTTGATTCCTTGCCGCCGGGTGCATTTAGTGCACCATTAGGGGCAGTGGCATTGGGGCAAAACAGCCAATCTGAATGGCCTGCTGAGGCAGAAGTTTATGAACATCTGGATAAGGGCATTTCAAGGACTCTCCATGAATATCAATTTATTCCAGAGCAGCCAACTGTTAGAAATGAGATATATGAAAGAGATACTACATCTGTTCATTTTAGTTCTCTTGATGGTGTTCCACATTCTAGTGAGCTGTCTTTCCTTAACGGGAATGAATATGCACCTAAGGTGTACGGAGTCCAAGGAGGGAATGATGATGTTCCACAAAAGAACCCATTTGTTGATGTATCTCTTGACACTCAAAGGGTGGCTCACCAAGTAACTCTGATTAACACCCCTCTAGTGCTATCTGATAGGACGGTTATCCATGAGGAGGAACTTTCAAGCTTTCAAAGGAAGCGAAAGAATGAAGAGGCTAGATTGCAACGGGAACTTGAAGTGCAAGAGAAAAGAATTAGAAAGGAACTTGTAAAACAGGATATTCTAAGGCAAAAGAGAGAGGAGCAAATAAAGAAAGAGATGGAGAGGCAAGAACGTGAAAGGCAGAAGGAAAAGGAAAGGTACCTTAGAGAACAGAAGCGCGAGCAAGAGCGACAGGAAAAGTTTTTGCAGAAGGAATCAATCAGAGCTGAGAAACTGAGACAGAAGGAAGAACTACAGAGGGTGAAGGATGAGGCAAGGATTAAAGCTGGAAGGGAGAGAGCTATTGCCCGCAGAATGGTCAAAGATGCAATAGACCTTATTGAAGATGAACGTCTAGAACTCATGAAATTAGCTGCATCAAAGAAGGGGCTATCTTCAACACTGGCTCTTGACTACGAAACTATTCAAAATCTTGAATCATATGGAGATGGGCGTACTTCCTTCCCACCCAAGTCTGTACAGTTGAAAAGAGCTTTTTCAATTCCACCTTGGTCTGATTCTGACGAGAATGTGGGAAATCTTCTGATGGTTTGGAAGTTCTTGATTACCTTTGCTGATGTTCTTGAAATATGGCCATTTACATTGGATGAGCTTATACAAGCTTTTCATGATTATGACCCGAGGATGTTAGGTGAGATCCATATCGCTCTACTGAGATCCATTATAAAAGATATTGAAGATGTTGCAAGAACACCCACCACTGGATTAGGAGCTAACCAAAGTAGTGTTACGAACTCTGGTGGGGGGCATCCACAGGTAGTTGAAGGGGCATATGCATGGGGTTTTGATATAAGAAATTGGCAGCGGCATTTAAATCCATTAACATGGCCAGAGATTTTGCGACAATTTGCATTGTCAGCTGGATTTGGGCCTCAATTAAAGAAACAGAATATTGAGCCAGTGCATCCTAGCAACCATGAGGGTAATGATGGTAAAGATATAATTTCTAATCTTCGAAATGGAGCTGCTGTTGAAAATGCTGTTGCTATTATGCAAGAGAAGTGTTTATCTAATCCAAGAAGAAATAAACATCGTTTGACGCCTGGAACTGTTAAATATGCTGCATTTCATGTCCTTTCTTTGGAAGGAAGCAGAGGCCTCAATATATTGGAAGTTGCAGACAAGATTCAGAAATCTGGACTCCGTGATCTTACAACTAGCAAGACACCAGAGGCTTCTATATCTTCTGCGTTGTCTAGGGATACAGAACTATTTGAAAAGACAGCTCCTTCAACATATTGTGTACGTCCTGCATACAGAAAGGACCCAGCTGATTCTGAAGTAATTTATTCAGCTGCCAGGGAAAGAATCAGGATATTCAAAAGTGGACTCGTGGTTGCAGAAGAAGTTGATGGTGAAAGGGATGAAGATTGTGAAACTGATGTGGCAAAAGATCATGATAATTATAAATTAAGAGTTCAAACAAATATGAAAAAGAAGGTCTCAGTTCATGAGGAATTTACTGCAAACACTATTGTGAGAAGTGGGAAGGACAATGGTGAGGTTTTGCAAACTCCTGATAGTTGTCATGAGAAAGTGCATGAGGGGTTAGGATCAACTGCTGATGGAGGCTTCAACGAACAGAAAGATGAACGTAGATCTAGTGAAATTAATGGTGTTGCTGATTCTATTCTAAAAGGCATAGATGTTGATGAAAGCACTCTTGGTGAACCATGGGTACAAGGGCTTATGGAGGGAGAGTATTCAGATCTCAGTGTAGAGGAGCGTCTTCACGCTCTTGTTGCTTTGATTACTGTGGCAATTGAAGGGAATTCTATTCGTGTTGTACTTGAGGAACGTCTAGAAGCTGCAAATGCTTTAAAGAAGCAGATATGGGCTGAGGCACAACTTGATAAACGACGTATTAAGGAGGATTATTTTGTTAAAATTTCATCTTTCTCAAATTTGGGAAACAAGAGAGAACCAGCTGTTACATTTCCATCAGTAGCGAGCAAAGAGTGCCCAGTGCATACTGTTGATGCCGAAAATGAGAAGGCTTTACTCACTCCCTGTGACCAGCATGAACAGATAACTTCACTGCAGGAAAATCAAAATCTTCTGCAGAATTCGTTAGAAGCGAACATGCAGAGATCATTGCCTCTTGGTTTGGATCGAAGACGAAACAGATACTGGCAATTCATTACTTCTGCTTCTATAAGCGATCCAGGTTGTGGCAGGATTTTTGTGGAATTGTATGATGGCTGTTGGAAGCTGATTGATTCTGAAGAGGGTTTTGATGCTCTATTGGCATCATTGGATGTGCGTGGAATCAGGGAGTCCCACTTGCATATGATGCTGCAAAGAATTGAGACGTCCTTCAAAGAATCTGTTAGAAGAAGTGTCCAAAATGACTTGAAAAAGCAAAATGGAGACACTGTCAAAAAACTCAAGACAGAAGCAGTTAAAATGGTCACACACCACGATTGCAGTATTAATATTTACTGCCCTACTTCTGTCTGCATGGATGATTTGAACACATCAGTGGCCTCAACATCTTTTACGGTTCAGCTTGGGAGAAATGAAGTTGAAGACAAAGATGCTTATATGAGATATTGGGAATTTGAGAAATGGATGCGAAAGGAATGTCTAAATAGCTCAGTATCATGTGCAATGAAGTTTGGGAAGAAAAGGTGCAAAGAACTACTTCTCATGTGTGATTTGTGCCATCATGTCTATTTCTGTAGAGGAACACCATGTTCTTCATGCCATAGAACTTTCAGTACTAGTCAGGGCAACTCTAGTTCTTATGAACATATTGCTCGTTCCGACGACAAAATAAAGATCGACACTAATCTTTTTCTTGATTCATCTTCTTCTCCATTGAGGATGAGATTGCTCAAAATCCTCTTGTCAGTTGTTGAGGCAACTCTTCCTCAAGAAGCTCTTAAACCTTTTTGGACAGAGAGGTACAGGAAGTCTTGGAGTTCAAAGCTGGAAGCTTCCTCATCAACTGAAGACATTATGCAGACATTGACTGCATTGGAATGTGCTATAAAAAGGGAGTATTTGGCTTCAGACTATGAAACTACCAGTGAGCTGTTTGGTTCTGTTTGTTCTTCTGAATGTCATCCTAATGATATCATTGGTGGTGAAAGGATACCTGTGCTTCCATGGGTGCCATCTACAACTGCCGCTGTGACTCTAAGGCTCATGGAACTCGATGCATGCATCTTTTACACTTCACAACAAAAGCTGGAGTCTGAGAAGGATAAACAAATTGGAATTGTTATGAAGCTTCCATCAAAATCTGCTGCTGCCAAAATTTCCTACAATGCTGGTGCCATTGAATCTTCATTTCAGGCTAACCATACTGTAGAGAACTGGGGTGCTCTTGGTGCTGGCCTTAAGAGCTACAGCAGAGAACAAAGGACTCAGCAAGTCCACAACCACTCTCATGGTCAAAGATCACAGGGAAGAGTTGCTAGCTCAAGACCCATTTCCAGAAAGAGAAGCACTACATCTAACAGCAGGAGAATAGGAAAATTACATGGATGGAATGGGTCACCGAACGGACAAGGACGCGTTCGTGGTCGGAGGAGCATTAGAAGCAGGCAGAAACCAGCAGCCAAGATGAATGTGATTGATGGTGAGAGAGATACCCCAAAAGACATCATGGAGGAAACACTAATCTTTGTCAGAGAGGAAATTAATGAAGGTGAAACAGAAGCCAATGTTCTAAATGCTAGCAATTCGGAAAGATCAGACTACGAAGGTGATCTTTATCGAGCAACAGGAGATGATGTGGAAGATGTGGATATGGATGATGATGTCGATGATGACATCGAAGATGGGCAGGCAGATCTTATAATTGGAGGGAACTCAAATACAGGGTACAGCAGAGAAGAAAATGAAGAAAAAACCGAGGATCCAGATGGTGTTGGTTCTACATCATTAGATTACAGTGATTAA 4818 0.422 MEGCSEGEENKVKRKMKSASQLEILEKAYAAEAYPSEALRAELSVKLGLSDRQLQMWFCHRRVKDRKASPIVNKAAVPIGYLDAQQVVAQYGVMGFTRMGAGLPAMEGSGYREAHQTLQELRAVALVERQLGETLREDGPILGMEFDSLPPGAFSAPLGAVALGQNSQSEWPAEAEVYEHLDKGISRTLHEYQFIPEQPTVRNEIYERDTTSVHFSSLDGVPHSSELSFLNGNEYAPKVYGVQGGNDDVPQKNPFVDVSLDTQRVAHQVTLINTPLVLSDRTVIHEEELSSFQRKRKNEEARLQRELEVQEKRIRKELVKQDILRQKREEQIKKEMERQERERQKEKERYLREQKREQERQEKFLQKESIRAEKLRQKEELQRVKDEARIKAGRERAIARRMVKDAIDLIEDERLELMKLAASKKGLSSTLALDYETIQNLESYGDGRTSFPPKSVQLKRAFSIPPWSDSDENVGNLLMVWKFLITFADVLEIWPFTLDELIQAFHDYDPRMLGEIHIALLRSIIKDIEDVARTPTTGLGANQSSVTNSGGGHPQVVEGAYAWGFDIRNWQRHLNPLTWPEILRQFALSAGFGPQLKKQNIEPVHPSNHEGNDGKDIISNLRNGAAVENAVAIMQEKCLSNPRRNKHRLTPGTVKYAAFHVLSLEGSRGLNILEVADKIQKSGLRDLTTSKTPEASISSALSRDTELFEKTAPSTYCVRPAYRKDPADSEVIYSAARERIRIFKSGLVVAEEVDGERDEDCETDVAKDHDNYKLRVQTNMKKKVSVHEEFTANTIVRSGKDNGEVLQTPDSCHEKVHEGLGSTADGGFNEQKDERRSSEINGVADSILKGIDVDESTLGEPWVQGLMEGEYSDLSVEERLHALVALITVAIEGNSIRVVLEERLEAANALKKQIWAEAQLDKRRIKEDYFVKISSFSNLGNKREPAVTFPSVASKECPVHTVDAENEKALLTPCDQHEQITSLQENQNLLQNSLEANMQRSLPLGLDRRRNRYWQFITSASISDPGCGRIFVELYDGCWKLIDSEEGFDALLASLDVRGIRESHLHMMLQRIETSFKESVRRSVQNDLKKQNGDTVKKLKTEAVKMVTHHDCSINIYCPTSVCMDDLNTSVASTSFTVQLGRNEVEDKDAYMRYWEFEKWMRKECLNSSVSCAMKFGKKRCKELLLMCDLCHHVYFCRGTPCSSCHRTFSTSQGNSSSYEHIARSDDKIKIDTNLFLDSSSSPLRMRLLKILLSVVEATLPQEALKPFWTERYRKSWSSKLEASSSTEDIMQTLTALECAIKREYLASDYETTSELFGSVCSSECHPNDIIGGERIPVLPWVPSTTAAVTLRLMELDACIFYTSQQKLESEKDKQIGIVMKLPSKSAAAKISYNAGAIESSFQANHTVENWGALGAGLKSYSREQRTQQVHNHSHGQRSQGRVASSRPISRKRSTTSNSRRIGKLHGWNGSPNGQGRVRGRRSIRSRQKPAAKMNVIDGERDTPKDIMEETLIFVREEINEGETEANVLNASNSERSDYEGDLYRATGDDVEDVDMDDDVDDDIEDGQADLIIGGNSNTGYSREENEEKTEDPDGVGSTSLDYSD 1605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01634 1605 ProSiteProfiles HARE-type HTH domain profile. 652 721 IPR007759 GO:0006355
Vifa6g01634 1605 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 860 901 IPR028942 -
Vifa6g01634 1605 ProSiteProfiles 'Homeobox' domain profile. 8 68 IPR001356 GO:0003677
Vifa6g01634 1605 Pfam Homeodomain 13 67 IPR001356 GO:0003677
Vifa6g01634 1605 CDD homeodomain 11 67 IPR001356 GO:0003677
Vifa6g01634 1605 Coils Coil 289 320 - -
Vifa6g01634 1605 Pfam DDT domain 472 527 IPR018501 -
Vifa6g01634 1605 Pfam HB1, ASXL, restriction endonuclease HTH domain 652 719 IPR007759 GO:0006355
Vifa6g01634 1605 SUPERFAMILY Homeodomain-like 9 67 IPR009057 -
Vifa6g01634 1605 Coils Coil 325 361 - -
Vifa6g01634 1605 ProSiteProfiles DDT domain profile. 471 530 IPR018501 -
Vifa6g01634 1605 MobiDBLite consensus disorder prediction 1551 1568 - -
Vifa6g01634 1605 MobiDBLite consensus disorder prediction 1545 1605 - -
Vifa6g01634 1605 MobiDBLite consensus disorder prediction 1432 1464 - -
Vifa6g01634 1605 Coils Coil 367 391 - -
Vifa6g01634 1605 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 995 1593 IPR044977 GO:0006357
Vifa6g01634 1605 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1000 1072 IPR028941 -
Vifa6g01634 1605 MobiDBLite consensus disorder prediction 1422 1494 - -
Vifa6g01634 1605 SMART HOX_1 10 72 IPR001356 GO:0003677
Vifa6g01634 1605 Gene3D - 4 71 - -
Vifa6g01634 1605 SMART testlast3 471 530 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01634 Vifa-Chr6 598463002 598483214 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01634 2 1394 Homeobox Transcription Factor Family AT5G44180 47.817 0.0 1230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vifa6g01634 WSD 9.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01634 - - gmx:100797480 1980.68