Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01633 ATGGAGGGTTGTTCAGAAGGAGAGGAGAACAAGGTGAAGCGCAAAATGAAATCTGCTTCACAGTTGGAGATTCTAGAAAAAGCATATGCTGCGGAGGCGTATCCGTCTGAGGCGTTGAGGGCTGAGCTATCTGTGAAGTTAGGTTTGTCTGATCGTCAGTTGCAGATGTGGTTCTGTCACCGGAGAGTGAAGGATAGGAAGGCTTCGCCCATTGTTAATAAGGCTGCGGTGCCAATTGGTTATTTGGATGCACAGCAGGTTGTGGCACAGTATGGGGTGATGGGATTTACTAGGATGGGAGCTGGATTGCCTGCAATGGAAGGCAGTGGTTACCGTGAAGCTCATCAGACGTTACAGGAGCTGCGAGCGGTTGCATTGGTGGAAAGACAGTTGGGGGAGACATTAAGAGAGGATGGACCTATACTTGGGATGGAATTTGATTCCTTGCCGCCGGGTGCATTTAGTGCACCATTAGGGGCAGTGGCATTGGGGCAAAACAGCCAATCTGAATGGCCTGCTGAGGCAGAAGTTTATGAACATCTGGATAAGGGCATTTCAAGGACTCTCCATGAATATCAATTTATTCCAGAGCAGCCAACTGTTAGAAATGAGATATATGAAAGAGATACTACATCTGTTCATTTTAGTTCTCTTGATGGTGTTCCACATTCTAGTGAGCTGTCTTTCCTTAACGGGAATGAATATGCACCTAAGGTGTACGGAGTCCAAGGTCAGAAGATGCCTGGTCTAAATCTTTTGTCTGAGTCTCGGCAAGTGCTATCTGATAGGACGGTTATCCATGAGGAGGAACTTTCAAGCTTTCAAAGGAAGCGAAAGAATGAAGAGGCTAGATTGCAACGGGAACTTGAAGTGCAAGAGAAAAGAATTAGAAAGGAACTTGTAAAACAGGATATTCTAAGGCAAAAGAGAGAGGAGCAAATAAAGAAAGAGATGGAGAGGCAAGAACGTGAAAGGCAGAAGGAAAAGGAAAGGTACCTTAGAGAACAGAAGCGCGAGCAAGAGCGACAGGAAAAGTTTTTGCAGAAGGAATCAATCAGAGCTGAGAAACTGAGACAGAAGGAAGAACTACAGAGGGTGAAGGATGAGGCAAGGATTAAAGCTGGAAGGGAGAGAGCTATTGCCCGCAGAATGGTCAAAGATGCAATAGACCTTATTGAAGATGAACGTCTAGAACTCATGAAATTAGCTGCATCAAAGAAGGGGCTATCTTCAACACTGGCTCTTGACTACGAAACTATTCAAAATCTTGAATCATATGGAGATGGGCGTACTTCCTTCCCACCCAAGTCTGTACAGTTGAAAAGAGCTTTTTCAATTCCACCTTGGTCTGATTCTGACGAGAATGTGGGAAATCTTCTGATGGTTTGGAAGTTCTTGATTACCTTTGCTGATGTTCTTGAAATATGGCCATTTACATTGGATGAGCTTATACAAGCTTTTCATGATTATGACCCGAGGATGTTAGGTGAGATCCATATCGCTCTACTGAGATCCATTATAAAAGATATTGAAGATGTTGCAAGAACACCCACCACTGGATTAGGAGCTAACCAAAGTAGTGTTACGAACTCTGGTGGGGGGCATCCACAGGTAGTTGAAGGGGCATATGCATGGGGTTTTGATATAAGAAATTGGCAGCGGCATTTAAATCCATTAACATGGCCAGAGATTTTGCGACAATTTGCATTGTCAGCTGGATTTGGGCCTCAATTAAAGAAACAGAATATTGAGCCAGTGCATCCTAGCAACCATGAGGGTAATGATGGTAAAGATATAATTTCTAATCTTCGAAATGGAGCTGCTGTTGAAAATGCTGTTGCTATTATGCAAGAGAAGTGTTTATCTAATCCAAGAAGAAATAAACATCGTTTGACGCCTGGAACTGTTAAATATGCTGCATTTCATGTCCTTTCTTTGGAAGGAAGCAGAGGCCTCAATATATTGGAAGTTGCAGACAAGATTCAGAAATCTGGACTCCGTGATCTTACAACTAGCAAGACACCAGAGGCTTCTATATCTTCTGCGTTGTCTAGGGATACAGAACTATTTGAAAAGACAGCTCCTTCAACATATTGTGTACGTCCTGCATACAGAAAGGACCCAGCTGATTCTGAAGTAATTTATTCAGCTGCCAGGGAAAGAATCAGGATATTCAAAAGTGGACTCGTGGTTGCAGAAGAAGTTGATGGTGAAAGGGATGAAGATTGTGAAACTGATGTGGCAAAAGATCATGATAATTATAAATTAAGAGTTCAAACAAATATGAAAAAGAAGGTCTCAGTTCATGAGGAATTTACTGCAAACACTATTGTGAGAAGTGGGAAGGACAATGGTGAGGTTTTGCAAACTCCTGATAGTTGTCATGAGAAAGTGCATGAGGGGTTAGGATCAACTGCTGATGGAGGCTTCAACGAACAGAAAGATGAACGTAGATCTAGTGAAATTAATGGTGTTGCTGATTCTATTCTAAAAGGCATAGATGTTGATGAAAGCACTCTTGGTGAACCATGGGTACAAGGGCTTATGGAGGGAGAGTATTCAGATCTCAGTGTAGAGGAGCGTCTTCACGCTCTTGTTGCTTTGATTACTGTGGCAATTGAAGGGAATTCTATTCGTGTTGTACTTGAGGAACGTCTAGAAGCTGCAAATGCTTTAAAGAAGCAGATATGGGCTGAGGCACAACTTGATAAACGACGTATTAAGGAGGATTATTTTGTTAAAATTTCATCTTTCTCAAATTTGGGAAACAAGAGAGAACCAGCTGTTACATTTCCATCAGTAGCGAGCAAAGAGTGCCCAGTGCATACTGTTGATGCCGAAAATGAGAAGGCTTTACTCACTCCCTGTGACCAGCATGAACAGATAACTTCACTGCAGGAAAATCAAAATCTTCTGCAGAATTCGTTAGAAGCGAACATGCAGAGATCATTGCCTCTTGGTTTGGATCGAAGACGAAACAGATACTGGCAATTCATTACTTCTGCTTCTATAAGCGATCCAGGTTGTGGCAGGATTTTTGTGGAATTGTATGATGGCTGTTGGAAGCTGATTGATTCTGAAGAGGGTTTTGATGCTCTATTGGCATCATTGGATGTGCGTGGAATCAGGGAGTCCCACTTGCATATGATGCTGCAAAGAATTGAGACGTCCTTCAAAGAATCTGTTAGAAGAAGTGTCCAAAATGACTTGAAAAAGCAAAATGGAGACACTGTCAAAAAACTCAAGACAGAAGCAGTTAAAATGGTCACACACCACGATTGCAGTATTAATATTTACTGCCCTACTTCTGTCTGCATGGATGATTTGAACACATCAGTGGCCTCAACATCTTTTACGGTTCAGCTTGGGAGAAATGAAGTTGAAGACAAAGATGCTTATATGAGATATTGGGAATTTGAGAAATGGATGCGAAAGGAATGTCTAAATAGCTCAGTATCATGTGCAATGAAGTTTGGGAAGAAAAGGTGCAAAGAACTACTTCTCATGTGTGATTTGTGCCATCATGTCTATTTCTGTAGAGGAACACCATGTTCTTCATGCCATAGAACTTTCAGTACTAGTCAGGGCAACTCTAGTTCTTATGAACATATTGCTCGTTCCGACGACAAAATAAAGATCGACACTAATCTTTTTCTTGATTCATCTTCTTCTCCATTGAGGATGAGATTGCTCAAAATCCTCTTGTCAGTTGTTGAGGCAACTCTTCCTCAAGAAGCTCTTAAACCTTTTTGGACAGAGAGGTACAGGAAGTCTTGGAGTTCAAAGCTGGAAGCTTCCTCATCAACTGAAGACATTATGCAGACATTGACTGCATTGGAATGTGCTATAAAAAGGGAGTATTTGGCTTCAGACTATGAAACTACCAGTGAGCTGTTTGGTTCTGTTTGTTCTTCTGAATGTCATCCTAATGATATCATTGGTGGTGAAAGGATACCTGTGCTTCCATGGGTGCCATCTACAACTGCCGCTGTGACTCTAAGGCTCATGGAACTCGATGCATGCATCTTTTACACTTCACAACAAAAGCTGGAGTCTGAGAAGGATAAACAAATTGGAATTGTTATGAAGCTTCCATCAAAATCTGCTGCTGCCAAAATTTCCTACAATGCTGGTGCCATTGAATCTTCATTTCAGGCTAACCATACTGTAGAGAACTGGGGTGCTCTTGGTGCTGGCCTTAAGAGCTACAGCAGAGAACAAAGGACTCAGCAAGTCCACAACCACTCTCATGGTCAAAGATCACAGGGAAGAGTTGCTAGCTCAAGACCCATTTCCAGAAAGAGAAGCACTACATCTAACAGCAGGAGAATAGGAAAATTACATGGATGGAATGGGTCACCGAACGGACAAGGACGCGTTCGTGGTCGGAGGAGCATTAGAAGCAGGCAGAAACCAGCAGCCAAGATGAATGTGATTGATGGTGAGAGAGATACCCCAAAAGACATCATGGAGGAAACACTAATCTTTGTCAGAGAGGAAATTAATGAAGGTGAAACAGAAGCCAATGTTCTAAATGCTAGCAATTCGGAAAGATCAGACTACGAAGGTGATCTTTATCGAGCAACAGGAGATGATGTGGAAGATGTGGATATGGATGATGATGTCGATGATGACATCGAAGATGGGCAGGCAGATCTTATAATTGGAGGGAACTCAAATACAGGGTACAGCAGAGAAGAAAATGAAGAAAAAACCGAGGATCCAGATGGTGTTGGTTCTACATCATTAGATTACAGTGATTAA 4764 0.4221 MEGCSEGEENKVKRKMKSASQLEILEKAYAAEAYPSEALRAELSVKLGLSDRQLQMWFCHRRVKDRKASPIVNKAAVPIGYLDAQQVVAQYGVMGFTRMGAGLPAMEGSGYREAHQTLQELRAVALVERQLGETLREDGPILGMEFDSLPPGAFSAPLGAVALGQNSQSEWPAEAEVYEHLDKGISRTLHEYQFIPEQPTVRNEIYERDTTSVHFSSLDGVPHSSELSFLNGNEYAPKVYGVQGQKMPGLNLLSESRQVLSDRTVIHEEELSSFQRKRKNEEARLQRELEVQEKRIRKELVKQDILRQKREEQIKKEMERQERERQKEKERYLREQKREQERQEKFLQKESIRAEKLRQKEELQRVKDEARIKAGRERAIARRMVKDAIDLIEDERLELMKLAASKKGLSSTLALDYETIQNLESYGDGRTSFPPKSVQLKRAFSIPPWSDSDENVGNLLMVWKFLITFADVLEIWPFTLDELIQAFHDYDPRMLGEIHIALLRSIIKDIEDVARTPTTGLGANQSSVTNSGGGHPQVVEGAYAWGFDIRNWQRHLNPLTWPEILRQFALSAGFGPQLKKQNIEPVHPSNHEGNDGKDIISNLRNGAAVENAVAIMQEKCLSNPRRNKHRLTPGTVKYAAFHVLSLEGSRGLNILEVADKIQKSGLRDLTTSKTPEASISSALSRDTELFEKTAPSTYCVRPAYRKDPADSEVIYSAARERIRIFKSGLVVAEEVDGERDEDCETDVAKDHDNYKLRVQTNMKKKVSVHEEFTANTIVRSGKDNGEVLQTPDSCHEKVHEGLGSTADGGFNEQKDERRSSEINGVADSILKGIDVDESTLGEPWVQGLMEGEYSDLSVEERLHALVALITVAIEGNSIRVVLEERLEAANALKKQIWAEAQLDKRRIKEDYFVKISSFSNLGNKREPAVTFPSVASKECPVHTVDAENEKALLTPCDQHEQITSLQENQNLLQNSLEANMQRSLPLGLDRRRNRYWQFITSASISDPGCGRIFVELYDGCWKLIDSEEGFDALLASLDVRGIRESHLHMMLQRIETSFKESVRRSVQNDLKKQNGDTVKKLKTEAVKMVTHHDCSINIYCPTSVCMDDLNTSVASTSFTVQLGRNEVEDKDAYMRYWEFEKWMRKECLNSSVSCAMKFGKKRCKELLLMCDLCHHVYFCRGTPCSSCHRTFSTSQGNSSSYEHIARSDDKIKIDTNLFLDSSSSPLRMRLLKILLSVVEATLPQEALKPFWTERYRKSWSSKLEASSSTEDIMQTLTALECAIKREYLASDYETTSELFGSVCSSECHPNDIIGGERIPVLPWVPSTTAAVTLRLMELDACIFYTSQQKLESEKDKQIGIVMKLPSKSAAAKISYNAGAIESSFQANHTVENWGALGAGLKSYSREQRTQQVHNHSHGQRSQGRVASSRPISRKRSTTSNSRRIGKLHGWNGSPNGQGRVRGRRSIRSRQKPAAKMNVIDGERDTPKDIMEETLIFVREEINEGETEANVLNASNSERSDYEGDLYRATGDDVEDVDMDDDVDDDIEDGQADLIIGGNSNTGYSREENEEKTEDPDGVGSTSLDYSD 1587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01633 1587 Coils Coil 349 373 - -
Vifa6g01633 1587 ProSiteProfiles 'Homeobox' domain profile. 8 68 IPR001356 GO:0003677
Vifa6g01633 1587 CDD homeodomain 11 67 IPR001356 GO:0003677
Vifa6g01633 1587 Gene3D - 4 71 - -
Vifa6g01633 1587 MobiDBLite consensus disorder prediction 1404 1476 - -
Vifa6g01633 1587 Pfam HB1, ASXL, restriction endonuclease HTH domain 634 701 IPR007759 GO:0006355
Vifa6g01633 1587 SUPERFAMILY Homeodomain-like 9 67 IPR009057 -
Vifa6g01633 1587 SMART testlast3 453 512 IPR018501 -
Vifa6g01633 1587 Pfam Homeodomain 13 67 IPR001356 GO:0003677
Vifa6g01633 1587 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 842 883 IPR028942 -
Vifa6g01633 1587 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 108 1575 IPR044977 GO:0006357
Vifa6g01633 1587 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 982 1054 IPR028941 -
Vifa6g01633 1587 ProSiteProfiles HARE-type HTH domain profile. 634 703 IPR007759 GO:0006355
Vifa6g01633 1587 ProSiteProfiles DDT domain profile. 453 512 IPR018501 -
Vifa6g01633 1587 Coils Coil 271 302 - -
Vifa6g01633 1587 Pfam DDT domain 454 509 IPR018501 -
Vifa6g01633 1587 Coils Coil 307 343 - -
Vifa6g01633 1587 SMART HOX_1 10 72 IPR001356 GO:0003677
Vifa6g01633 1587 MobiDBLite consensus disorder prediction 1527 1587 - -
Vifa6g01633 1587 MobiDBLite consensus disorder prediction 1414 1446 - -
Vifa6g01633 1587 MobiDBLite consensus disorder prediction 1533 1550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01633 Vifa-Chr6 598463002 598483214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01633 2 1372 Homeobox Transcription Factor Family AT5G44180 47.771 0.0 1222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vifa6g01633 WSD 9.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01633 - - gmx:100797480 1945.24