Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01632 ATGGGTGTAGACTACTACAAAATCTTGCAGGTTGATAAGAACGCAAAAGACGAAGAATTGAAGAAGGCTTACAGAAAACTTGCCATGAAATGGCACCCTGATAAAAACCCAACCAACAAGAAAGATGCAGAAGCTAAGTTCAAGCAAATTTCTGAAGCTTATGAGGTACTCAGTGATCCTGAAAAGAGAGCAATCTATGATCAATATGGGGAAGAGGGTTTGAAGGGTCAAGTTCCTCCTCCTGATGCTGGTAGTGGTGGTGGAACTAGTTTCTATTCCACAGGAGATATCCCTGGATCGTTTCGGTTTAATCCGAGGAATGCAGATGATATTTTTGCTGAGTTTTTTGGATTCTCAAGCCCATTTGGTGGCATGAGTGGAAGAAGTGGTGGTGGCGGCGGCGGCATGAGATCTAGGTTCCCTGCTGGAATGTTTGGTGATGATGTGTTTGGATCTTTTGCGGAAGGAGGAGGAATGCATATGAATCAAGGTGTATCTCGTAAAGCTCCTGCTATTGAGAACAAGTTGAGTTGCACTCTTGAGGAGATATATAAAGGAACTACAAAGAAGATGAAGATCTCTAGAGAAATAGCTGATGCCAGTGGCAAAACCATGCCGGTGGAAGAGATATTGACCATAACTGTGAAGCCAGGTTGGAAGAAAGGCACAAAGATTACCTTCCCAGAAAAGGGCAACGAACAGCCGAATGTAACCACTGCAGATCTTGTTTTTGTGATTGATGAAAGGCCACACAGCGTGTTCAATCGTGAAGGAAACGACCTGGTTGTGACTCAAAAGATATCTCTTGTGGAGGCCTTAACTGGTTATACAGTGCACCTCACTACACTGGATGGTAGAAACTTAAGCATACCAATCAACAATGTCATTCATCCTAAGTATGAGGAGGTTGTTCCAAAAGAAGGGATGCCACTCCCTAAGGATCCATCAAAGAAGGGGAATTTGAGGATAAAGTTTAACATCAAGTTCCCTAATAGGCTCACTGATGAACAGAAAGCAGGAGTTAGAAAACTCTTGGGTGCCTCACTCTGA 1050 0.4333 MGVDYYKILQVDKNAKDEELKKAYRKLAMKWHPDKNPTNKKDAEAKFKQISEAYEVLSDPEKRAIYDQYGEEGLKGQVPPPDAGSGGGTSFYSTGDIPGSFRFNPRNADDIFAEFFGFSSPFGGMSGRSGGGGGGMRSRFPAGMFGDDVFGSFAEGGGMHMNQGVSRKAPAIENKLSCTLEEIYKGTTKKMKISREIADASGKTMPVEEILTITVKPGWKKGTKITFPEKGNEQPNVTTADLVFVIDERPHSVFNREGNDLVVTQKISLVEALTGYTVHLTTLDGRNLSIPINNVIHPKYEEVVPKEGMPLPKDPSKKGNLRIKFNIKFPNRLTDEQKAGVRKLLGASL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01632 349 FunFam DnaJ subfamily B member 13 3 126 - -
Vifa6g01632 349 CDD DnaJ 4 59 IPR001623 -
Vifa6g01632 349 CDD DnaJ_C 172 333 - -
Vifa6g01632 349 FunFam DnaJ subfamily B member 13 251 331 - -
Vifa6g01632 349 Gene3D - 251 331 - -
Vifa6g01632 349 Gene3D DnaJ domain 3 128 IPR036869 -
Vifa6g01632 349 SUPERFAMILY Chaperone J-domain 3 73 IPR036869 -
Vifa6g01632 349 SUPERFAMILY HSP40/DnaJ peptide-binding domain 167 261 IPR008971 GO:0006457|GO:0051082
Vifa6g01632 349 SUPERFAMILY HSP40/DnaJ peptide-binding domain 253 339 IPR008971 GO:0006457|GO:0051082
Vifa6g01632 349 Pfam DnaJ domain 4 67 IPR001623 -
Vifa6g01632 349 Pfam DnaJ C terminal domain 172 330 IPR002939 -
Vifa6g01632 349 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vifa6g01632 349 SMART dnaj_3 3 62 IPR001623 -
Vifa6g01632 349 Gene3D - 170 249 - -
Vifa6g01632 349 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vifa6g01632 349 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vifa6g01632 349 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vifa6g01632 349 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vifa6g01632 349 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 345 - -
Vifa6g01632 349 FunFam Dnaj homolog subfamily b member 168 249 - -
Vifa6g01632 349 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Vifa6g01632 349 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01632 Vifa-Chr6 598417539 598419219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01632 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 7.55e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01632 K09510 - gmx:100778672 590.882