Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01630 ATGGTGGATTGGACACCAGAATTGCACAGAAGATTTGTGCAAGCTGTGGAACAACTAGGATTGGATAAGGCAGTGCCTTCAAGGATTTTGGAGACTATGGGAATTGATTGTCTCACTCGCCATAACATTGCCAGTCACCTTCAGAAATATAGGTCCCATAGAAAACATGTGTTAGCCCGTGAAGCAGAAGCAGCAAACTGGAATCAAAGAAGACATGTGTCATGGCCAACTGCTGCAGCAGCACCCACCATGGCTTTTCCTCATCCTCCTACTCCTCCTTCCATGATTCCATTGCACCATGTTAAACCCTTACATGTATGGGGACATCCTTCAATGGACCAGTCAGTTATGCACATGTGGCCGAAGCCGCAGCCGCTGTCGTGGCTACCAACACTGCCTCAAGACCCTTCATTTTGGCATTCTCAACACCAACAGAGATCATTTGGATGTCAACTCCCCAGCATCCCACCACATGGTATGTACAAAGCAGATCACAGTATTGCCGCCCCCGGTCCCGGTCCCTTCTTCGACTTCCATCCCTCGAATGAGACCATAGATGCAGCTATTGGAGACGTTTTATCAAAGCCATGGTTGCCGCTACCACTTGGACTTAAAGCTCCAGCACTTGACAGCGTAATGAGTGAACTACAAAGACAAGGAATTTCAAACATTCCACCATCATGA 684 0.4781 MVDWTPELHRRFVQAVEQLGLDKAVPSRILETMGIDCLTRHNIASHLQKYRSHRKHVLAREAEAANWNQRRHVSWPTAAAAPTMAFPHPPTPPSMIPLHHVKPLHVWGHPSMDQSVMHMWPKPQPLSWLPTLPQDPSFWHSQHQQRSFGCQLPSIPPHGMYKADHSIAAPGPGPFFDFHPSNETIDAAIGDVLSKPWLPLPLGLKAPALDSVMSELQRQGISNIPPS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01630 227 PANTHER TRANSCRIPTION ACTIVATOR GLK1 2 227 IPR044825 GO:0003700|GO:0045893
Vifa6g01630 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Vifa6g01630 227 SUPERFAMILY Homeodomain-like 3 56 IPR009057 -
Vifa6g01630 227 NCBIfam myb-like DNA-binding domain, SHAQKYF class 2 53 IPR006447 GO:0003677
Vifa6g01630 227 FunFam Two-component response regulator 1 58 - -
Vifa6g01630 227 Gene3D - 1 57 - -
Vifa6g01630 227 Pfam Myb-like DNA-binding domain 3 51 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01630 Vifa-Chr6 597314313 597315488 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01630 2 125 G2-like Transcription Factor Family AT5G44190 58.519 3.19e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa6g01630 Myb_DNA-binding 8.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01630 - - aprc:113858121 309.686