Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01611 ATGGCTGGAATTTTGAAACAACCAGGTCCATTCGCAATAACTCCACACAAAGTATCCCTCTGCATACTCTTCAAGAATCTACGCTCCTCCAACTCTTCCCCTAACACCATTACCGGATTTTCCTCCTTGAAGAGCGGTGACCAGGAAGCTCTCACGAAGTTATTTGCTGGAAAGGACAAGTCTGAAAAGGCTGGTGAAGCAACGGAAGACATACAAAACGAAAAGCAAGATACTGAAGAAAGTGGTTCAAAGAAAAGAAAATTATCCACGTCTGAGGTTAATATCACCTTTTCCGTTTCTGATGTCAAGAGTACATACAAGGATGCTACCCTTTTGCCCAAATGGAAGGCATTCCAGACAATCATTTTCTTGAAGGGGATGATGTCCCTCATGTATCCCTTAATTCCTGATAAGCTGCAAACCTTATACAACGATGGCTACAAACTGGTAATTTTCACCAATGAATCCAATATTGATCGTTGGAAGAATCAAAGACAAAAAGCCGTGGACTCAAAAATTGGACGGCTAAATCAGTTTATTGAGAAAGTGAAGGTCCCAATTCAGGTTTTTATAACTCGTGGGACAGGTGGTAAATCAGGCAAGGCTGGAACAAAGGAAGTTGATCCTTTTCGGAAACCAAAACCTCAATGGGGCGCTGCTGTTGGTATCCAGGTTCCTATTGATGCTATGTTCCAGAAGGACGAAATGATTGACCTCATTGGAGTGACAAAGAGCAATAGGGTTTTCTACAACCCAATTCTGTGA 765 0.4209 MAGILKQPGPFAITPHKVSLCILFKNLRSSNSSPNTITGFSSLKSGDQEALTKLFAGKDKSEKAGEATEDIQNEKQDTEESGSKKRKLSTSEVNITFSVSDVKSTYKDATLLPKWKAFQTIIFLKGMMSLMYPLIPDKLQTLYNDGYKLVIFTNESNIDRWKNQRQKAVDSKIGRLNQFIEKVKVPIQVFITRGTGGKSGKAGTKEVDPFRKPKPQWGAAVGIQVPIDAMFQKDEMIDLIGVTKSNRVFYNPIL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01611 254 Pfam Polynucleotide kinase 3 phosphatase 129 215 IPR013954 -
Vifa6g01611 254 SUPERFAMILY HAD-like 130 216 IPR036412 -
Vifa6g01611 254 NCBIfam HAD-IIIA family hydrolase 129 217 IPR006549 -
Vifa6g01611 254 PANTHER BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE 30 125 - -
Vifa6g01611 254 Gene3D - 112 240 IPR023214 -
Vifa6g01611 254 MobiDBLite consensus disorder prediction 59 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01611 Vifa-Chr6 594348981 594349833 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01611 224 244 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 85.714 7.93e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01611 K08073 - gmx:100796730 238.039