Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01602 ATGGAGGGGACACGAGAAGATGCACGATCGGTGGAGCAAAGGCAATCCAATGTGTCACACTGGCCTTCAGATTTCGTTGGAAAATTTGGATCTGTTTCTTTGGGAACTCAAGATGAGACCTTAAATAATAGAGAATCACCTAGATATTCTAACCAAGATTTTACGTCACCTCAGAGGGCATCACAAATTCTCTGGCACACTGGAATGCTATCAGAACCAATACCAAATGGTTTTTACTCAGTTGTTCCGGAGAAAAGGCTCAAGAAACTTTTTGATAGTATTCCTACTCTGGATGATCTTCAAGCTTTGGGTGGAGAGGGTTTTAAGGCTGATGTCATTGTTGTGGATGCAAAGAAAGATAGAAAGTTATCTATGCTGAAGCAACTAATTGTCACATTGGTCAAAGGATTGAGCACAAATCCAGCTGCAATTATTAAGAAGATAGCTGGATTAGTTTCCGATTTCTACAAGCGGGCAAATGTTGATAGTCCAGCAAAAGCTGCACTCGAAGAATCCTCTCACATGTTTGAAAGTCGTGGCGTCCAGATGCTGGGGCAAATAAAGCATGGTTCATGCCGTCCTCGAGCTATCTTATTTAAAGTATTAGCAGATACTGTAGGTCTTGAAAGTAGGCTTATGATGGGTTTTCCAAATGAGGGGGCTGCTGATTGTGTAGACTCTTACAAGCATATGTCTGTGATAGTTGTGTTAAATTCTGTGGAACTGCTGGTTGATCTTATGCGCTTTCCTGGCCAACTGTTACCGCGATCAATCAAATCAATTCTTATGACACACATTTCTGCAGCGGGAGAGAGTGATTCAGCAGAAAATGATTCGTGTGATTCACCATTAGAACCAAACAGTCCTTTATATGGGGTTTCAGAGAGTGCTGAAAAAGATGACAATCTCCAATTTCATAGAAGATTTGATACTTTAAATGTACCTGGTCCTACCTTGCGAAGCATGATGTTACGATCAAATTCCAATCTTGAAGGGAAATTAAGTCTGTCTCATAGTGAACCCAACATTGCAACTTCATTTGGTCGGCGCAGTCGAAGAAAGGTCATTGCTGAACAGAGAACTGCTAGTTCAAGTCCCGAACATCCATTATTTCAAGCTCGTGGGCAGTCTAAGCTTGGCCGTGACAAGACAGCATTTAGAGATTTTGCTGATGACCAGGCTACATCAAGATCCAGCTATAAGTCAGATGGTGCATCCTCATCAGAAGCTCGTAGGATACGACGAAGAAGCATCAGTATTACACCAGAGATCGGTGATGATATTGCAAGGGCTGTGCGAGCAATGAATGAAAAACTAAAGCAAAACCGTCATCTAAGGGAACAAGGGGATGATAGTTCCTTGCCGCATTCTCCCAATGATAGAGTTAGCAGCGCAGAGCTTCAGAAAAATCTGTCAAATTTTTGTCTTGCTGGTCATCATGAAACGTCCCCCTTATATCAACTGCGTCGTGACAATGTAACTTCTCAGAAGGCAATGTCATTACCCTCTTCACCACATGATTATCGAGATCAAACTTCCGAGACAAGCAGGCCACCGGGATATGAATTGAATGATGAACTGGAGTCAACTTGGAATAAAATCCTTGAATCATCAATGTCGAACAATAAACCTCTGTTACCATATGAAGAGTGGAACATTGATTTCTCAGAATTGACTGTTGGAACTCGTGTTGGGATCGGGTTCTTTGGAGAAGTTTTCCGTGGCATATGGAATGGCACAGATGTTGCAATCAAAGTTTTCCTTGAGCAAGATTTAACTGCTGAAAACATGGAAGATTTCTGCAATGAGATATCCATTCTCAGCCGACTCAGACATCCTAATGTCATCTTATTTCTTGGTGCATGCACAAAGCCTCCACGGTTGTCAATGGTGACCGAATATATGGAAATGGGATCTTTGTTCTACTTGATTCATGTGAGTGGTCAAAAAAAGAAGCTTAGTTGGCGAAGAAGACTAAAGATGCTTCGTGACATATGCAGGGGCTTGATGCATATTCATCGAATGAAGATTATACACCGTGATGTGAAAAGTGCGAATTGCCTCGTGGATAAGCATTGGACAGTGAAAATCTGTGATTTTGGACTTTCGAGAATAATTACAGATTCTCCCATGAAAGATTCTTCTTCAGCTGGAACACCTGAATGGATGGCTCCTGAACTGATTCGAAACGAACCGTTCACTGAAAAATGTGATATCTTTAGCCTAGGGGTGATAATGTGGGAGCTCTGCAACTTGAGTAGGCCTTGGGAAGGCGTCCCTCCTGAGAGGGTGGTTTATACTGTTGCTAATGAGGGTTCCAGATTGGAGATTCCTGAAGGCCCACTAGGCAGGCTGATTTCAGAGTGCTGGGCTGAACCGCATGAGCGACCAAGTTGTGAGGAGATCCTATCTCGCTTGGTGGACATCGAGTACTCAATGTCCTGA 2445 0.427 MEGTREDARSVEQRQSNVSHWPSDFVGKFGSVSLGTQDETLNNRESPRYSNQDFTSPQRASQILWHTGMLSEPIPNGFYSVVPEKRLKKLFDSIPTLDDLQALGGEGFKADVIVVDAKKDRKLSMLKQLIVTLVKGLSTNPAAIIKKIAGLVSDFYKRANVDSPAKAALEESSHMFESRGVQMLGQIKHGSCRPRAILFKVLADTVGLESRLMMGFPNEGAADCVDSYKHMSVIVVLNSVELLVDLMRFPGQLLPRSIKSILMTHISAAGESDSAENDSCDSPLEPNSPLYGVSESAEKDDNLQFHRRFDTLNVPGPTLRSMMLRSNSNLEGKLSLSHSEPNIATSFGRRSRRKVIAEQRTASSSPEHPLFQARGQSKLGRDKTAFRDFADDQATSRSSYKSDGASSSEARRIRRRSISITPEIGDDIARAVRAMNEKLKQNRHLREQGDDSSLPHSPNDRVSSAELQKNLSNFCLAGHHETSPLYQLRRDNVTSQKAMSLPSSPHDYRDQTSETSRPPGYELNDELESTWNKILESSMSNNKPLLPYEEWNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMEMGSLFYLIHVSGQKKKLSWRRRLKMLRDICRGLMHIHRMKIIHRDVKSANCLVDKHWTVKICDFGLSRIITDSPMKDSSSAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCNLSRPWEGVPPERVVYTVANEGSRLEIPEGPLGRLISECWAEPHERPSCEEILSRLVDIEYSMS 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01602 814 Pfam Ethylene-responsive protein kinase Le-CTR1 58 253 - -
Vifa6g01602 814 Pfam Protein tyrosine and serine/threonine kinase 559 806 IPR001245 GO:0004672|GO:0006468
Vifa6g01602 814 MobiDBLite consensus disorder prediction 442 462 - -
Vifa6g01602 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 677 689 IPR008271 GO:0004672|GO:0006468
Vifa6g01602 814 SMART serkin_6 558 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01602 814 MobiDBLite consensus disorder prediction 272 293 - -
Vifa6g01602 814 MobiDBLite consensus disorder prediction 391 406 - -
Vifa6g01602 814 MobiDBLite consensus disorder prediction 495 519 - -
Vifa6g01602 814 Coils Coil 428 448 - -
Vifa6g01602 814 MobiDBLite consensus disorder prediction 331 414 - -
Vifa6g01602 814 SUPERFAMILY Protein kinase-like (PK-like) 533 806 IPR011009 -
Vifa6g01602 814 MobiDBLite consensus disorder prediction 495 522 - -
Vifa6g01602 814 CDD STKc_MAP3K-like 564 806 - -
Vifa6g01602 814 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 298 806 - -
Vifa6g01602 814 MobiDBLite consensus disorder prediction 331 346 - -
Vifa6g01602 814 ProSiteProfiles Protein kinase domain profile. 558 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01602 814 Gene3D Phosphorylase Kinase; domain 1 551 636 - -
Vifa6g01602 814 FunFam Serine/threonine-protein kinase isoform 1 548 636 - -
Vifa6g01602 814 ProSitePatterns Protein kinases ATP-binding region signature. 564 585 IPR017441 GO:0005524
Vifa6g01602 814 MobiDBLite consensus disorder prediction 1 30 - -
Vifa6g01602 814 Gene3D Transferase(Phosphotransferase) domain 1 637 813 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01602 Vifa-Chr6 592849277 592879367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01602 1 813 MAP Kinase Kinase Kinase AT3G58640 68.902 0.0 1141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Vifa6g01602 PK_Tyr_Ser-Thr 1.5e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01602 - - gmx:100807193 1398.65